9GSA | pdb_00009gsa

Lys9DabMC6*a 1-Delta


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 400 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report

Validation slider image for 9GSA

This is version 1.2 of the entry. See complete history

Literature

Iron to Cobalt Swapping in a Bioinspired Heme-Peroxidase: Structural Characterization and Functional Implications.

Chino, M.Cerrone, C.Pirro, F.De Fenza, M.Demeshko, S.Maglio, O.Meyer, F.Lombardi, A.

(2026) Inorg Chem 65: 9359-9371

  • DOI: https://doi.org/10.1021/acs.inorgchem.5c05553
  • Primary Citation Related Structures: 
    9GSA, 9GW6

  • PubMed Abstract: 

    Artificial heme enzymes offer unique opportunities to disentangle structure-function relationships and design novel biocatalysts. Mimochromes (MCs) are artificial, small-sized heme proteins able to reproduce the structural and functional features of natural heme enzymes. Here, we report the spectroscopic and structural investigation of a Mimochrome VI (MC6) analogue, Lys9DabMC6*a, for which we were previously able to isolate two distinct regioisomers. Mössbauer and EPR spectroscopy revealed distinct pH-dependent high-spin and quantum mixed-spin states in the Fe(III) complexes for both regioisomers. A detailed structural characterization was performed by NMR spectroscopy on the diamagnetic Co(III) analogues, providing high-resolution structures of the two isolated regioisomers. Both species show the intended helix-heme-helix sandwich fold but differ in interhelical orientation, axial histidine positioning, and second-sphere interactions, despite having the same peptide composition. Based on the reported electronic properties and structural features, we retrospectively attempt to elucidate the differences in substrate affinity and turnover frequency between the two regioisomers. Our results provide useful insights for the rational evolution of heme-based artificial minienzymes and highlight the minimal determinants required to achieve catalytic diversity.


  • Organizational Affiliation
    • Department of Chemical Sciences, University of Naples Federico II, Via Cintia 21, Napoli 80126, Italy.

Macromolecule Content 

  • Total Structure Weight: 3.49 kDa 
  • Atom Count: 244 
  • Modeled Residue Count: 28 
  • Deposited Residue Count: 28 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:  Sequence   |   3D Structure  
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
ACE-ASP-GLU-AIB-GLN-LEU-SER-AIB-GLN-DAB-ARG-NH212synthetic constructMutation(s): 0 
Find similar proteins by:  Sequence   |   3D Structure  
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
ACE-ASP-LEU-GLN-GLN-LEU-HIS-SER-GLN-LYS-ARG-LYS-ILE-THR-LEU-NH216synthetic constructMutation(s): 0 

Small Molecules

Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
DEU
(Subject of Investigation/LOI)

Query on DEU



Download:Ideal Coordinates CCD File
D [auth A]CO(III)-(DEUTEROPORPHYRIN IX)
C30 H28 Co N4 O4
KHTDHHCCHPGKMR-RWRCOHKGSA-L
OH

Query on OH



Download:Ideal Coordinates CCD File
C [auth A]HYDROXIDE ION
H O
XLYOFNOQVPJJNP-UHFFFAOYSA-M
Modified Residues  2 Unique
IDChains TypeFormula2D DiagramParent
AIB
Query on AIB
A
L-PEPTIDE LINKINGC4 H9 N O2ALA
DAB
Query on DAB
A
L-PEPTIDE LINKINGC4 H10 N2 O2ALA

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 400 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Other government--
Other government--

Revision History  (Full details and data files)

  • Version 1.0: 2026-01-14
    Type: Initial release
  • Version 1.1: 2026-05-06
    Changes: Database references
  • Version 1.2: 2026-05-13
    Changes: Database references