9GNM

X-ray crystal structure of VvPYL1-ABA

• PDB DOI: https://doi.org/10.2210/pdb9GNM/pdb

• Classification: PLANT PROTEIN
• Organism(s): Escherichia coli
• Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
• Mutation(s): No 


• Deposited: 2024-09-03 Released: 2024-10-16 
• Deposition Author(s): Rivera-Moreno, M., Benavente, J.L., Infantes, L., Albert, A.
• Funding Organization(s): Spanish Ministry of Science, Innovation, and Universities

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Free: 0.270 
• R-Value Work: 0.232 
• R-Value Observed: 0.234 

Starting Model: experimental

Literature

Regulation of transpiration in grapevine through chemical activation of ABA signaling by ABA receptor agonists

Rivera-Moreno, M., Benavente, J.L., Infantes, L., Albert, A.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 48.37 kDa 
• Atom Count: 3,076 
• Modelled Residue Count: 382 
• Deposited Residue Count: 428 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Abscisic acid receptor PYR1	A, B	214	Escherichia coli	Mutation(s): 0  Gene Names: VIT_02s0012g01270
UniProt
Find proteins for F6HT94 (Vitis vinifera) Explore F6HT94  Go to UniProtKB:  F6HT94

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
P6G	C [auth B]	HEXAETHYLENE GLYCOL C12 H26 O7 IIRDTKBZINWQAW-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Free: 0.270 
• R-Value Work: 0.232 
• R-Value Observed: 0.234 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 54.028	α = 90
b = 69.417	β = 90
c = 107.698	γ = 90

Software Package:

Software Name	Purpose
XDS	data reduction
XDS	data scaling
PHENIX	refinement
Coot	model building

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-10-16 
Deposition Author(s): Rivera-Moreno, M., Benavente, J.L., Infantes, L., Albert, A.

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Funding Organization	Location	Grant Number
Spanish Ministry of Science, Innovation, and Universities	Spain	PID2020-119805RB-I00

Revision History  

• Version 1.0: 2024-10-16
  Type: Initial release