9GCT

Rho-ATP-Psu complex II expanded

PDB DOI: https://doi.org/10.2210/pdb9GCT/pdb
EM Map EMD-51236: EMDB EMDataResource

Classification: TRANSCRIPTION
Organism(s): Escherichia coli, Enterobacteria phage P4
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2024-08-02 Released: 2024-10-09
Deposition Author(s): Gjorgjevikj, D., Wahl, M.C., Hilal, T., Loll, B.
Funding Organization(s): German Research Foundation (DFG)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.70 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Rho-ATP-Psu complex II expanded

Gjorgjevikj, D., Wahl, M.C., Hilal, T., Loll, B.

To be published.

Macromolecule Content

Total Structure Weight: 1,060.6 kDa
Atom Count: 73,940
Modelled Residue Count: 9,322
Deposited Residue Count: 9,364
Unique protein chains: 2

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Transcription termination factor Rho	A B C D E A, B, C, D, E, F, G, H, I [auth J], J [auth K], K [auth L], L [auth M], M [auth N], N [auth O], O [auth P], P [auth Y]	419	Escherichia coli	Mutation(s): 0 Gene Names: rho, nitA, psuA, rnsC, sbaA, tsu, b3783, JW3756 EC: 3.6.4
UniProt
Find proteins for P0AG30 (Escherichia coli (strain K12)) Explore P0AG30 Go to UniProtKB: P0AG30
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P0AG30
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Polarity suppression protein	AA [auth k] BA [auth l] CA [auth o] DA [auth p] Q [auth a] AA [auth k], BA [auth l], CA [auth o], DA [auth p], Q [auth a], R [auth b], S [auth c], T [auth d], U [auth e], V [auth f], W [auth g], X [auth h], Y [auth i], Z [auth j]	190	Enterobacteria phage P4	Mutation(s): 0 Gene Names: psu
UniProt
Find proteins for P05460 (Enterobacteria phage P4) Explore P05460 Go to UniProtKB: P05460
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P05460
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ATP (Subject of Investigation/LOI) Query on ATP Download Ideal Coordinates CCD File SDF format, chain AB [auth M] SDF format, chain CB [auth N] SDF format, chain EA [auth A] SDF format, chain EB [auth O] SDF format, chain GA [auth B] SDF format, chain GB [auth P] SDF format, chain IA [auth C] SDF format, chain KA [auth D] SDF format, chain MA [auth E] SDF format, chain OA [auth F] SDF format, chain QA [auth G] SDF format, chain SA [auth H] SDF format, chain UA [auth J] SDF format, chain WA [auth K] SDF format, chain YA [auth L] MOL2 format, chain AB [auth M] MOL2 format, chain CB [auth N] MOL2 format, chain EA [auth A] MOL2 format, chain EB [auth O] MOL2 format, chain GA [auth B] MOL2 format, chain GB [auth P] MOL2 format, chain IA [auth C] MOL2 format, chain KA [auth D] MOL2 format, chain MA [auth E] MOL2 format, chain OA [auth F] MOL2 format, chain QA [auth G] MOL2 format, chain SA [auth H] MOL2 format, chain UA [auth J] MOL2 format, chain WA [auth K] MOL2 format, chain YA [auth L]	AB [auth M] CB [auth N] EA [auth A] EB [auth O] GA [auth B] AB [auth M], CB [auth N], EA [auth A], EB [auth O], GA [auth B], GB [auth P], IA [auth C], KA [auth D], MA [auth E], OA [auth F], QA [auth G], SA [auth H], UA [auth J], WA [auth K], YA [auth L]	ADENOSINE-5'-TRIPHOSPHATE C₁₀ H₁₆ N₅ O₁₃ P₃ ZKHQWZAMYRWXGA-KQYNXXCUSA-N		Interactions Focus chain AB [auth M] Focus chain CB [auth N] Focus chain EA [auth A] Focus chain EB [auth O] Focus chain GA [auth B] Focus chain GB [auth P] Focus chain IA [auth C] Focus chain KA [auth D] Focus chain MA [auth E] Focus chain OA [auth F] Focus chain QA [auth G] Focus chain SA [auth H] Focus chain UA [auth J] Focus chain WA [auth K] Focus chain YA [auth L] Interactions & Density Focus chain AB [auth M] Focus chain CB [auth N] Focus chain EA [auth A] Focus chain EB [auth O] Focus chain GA [auth B] Focus chain GB [auth P] Focus chain IA [auth C] Focus chain KA [auth D] Focus chain MA [auth E] Focus chain OA [auth F] Focus chain QA [auth G] Focus chain SA [auth H] Focus chain UA [auth J] Focus chain WA [auth K] Focus chain YA [auth L]
MG (Subject of Investigation/LOI) Query on MG Download Ideal Coordinates CCD File SDF format, chain BB [auth M] SDF format, chain DB [auth N] SDF format, chain FA [auth A] SDF format, chain FB [auth O] SDF format, chain HA [auth B] SDF format, chain HB [auth P] SDF format, chain JA [auth C] SDF format, chain LA [auth D] SDF format, chain NA [auth E] SDF format, chain PA [auth F] SDF format, chain RA [auth G] SDF format, chain TA [auth H] SDF format, chain VA [auth J] SDF format, chain XA [auth K] SDF format, chain ZA [auth L] MOL2 format, chain BB [auth M] MOL2 format, chain DB [auth N] MOL2 format, chain FA [auth A] MOL2 format, chain FB [auth O] MOL2 format, chain HA [auth B] MOL2 format, chain HB [auth P] MOL2 format, chain JA [auth C] MOL2 format, chain LA [auth D] MOL2 format, chain NA [auth E] MOL2 format, chain PA [auth F] MOL2 format, chain RA [auth G] MOL2 format, chain TA [auth H] MOL2 format, chain VA [auth J] MOL2 format, chain XA [auth K] MOL2 format, chain ZA [auth L]	BB [auth M] DB [auth N] FA [auth A] FB [auth O] HA [auth B] BB [auth M], DB [auth N], FA [auth A], FB [auth O], HA [auth B], HB [auth P], JA [auth C], LA [auth D], NA [auth E], PA [auth F], RA [auth G], TA [auth H], VA [auth J], XA [auth K], ZA [auth L]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain BB [auth M] Focus chain DB [auth N] Focus chain FA [auth A] Focus chain FB [auth O] Focus chain HA [auth B] Focus chain HB [auth P] Focus chain JA [auth C] Focus chain LA [auth D] Focus chain NA [auth E] Focus chain PA [auth F] Focus chain RA [auth G] Focus chain TA [auth H] Focus chain VA [auth J] Focus chain XA [auth K] Focus chain ZA [auth L] Interactions & Density Focus chain BB [auth M] Focus chain DB [auth N] Focus chain FA [auth A] Focus chain FB [auth O] Focus chain HA [auth B] Focus chain HB [auth P] Focus chain JA [auth C] Focus chain LA [auth D] Focus chain NA [auth E] Focus chain PA [auth F] Focus chain RA [auth G] Focus chain TA [auth H] Focus chain VA [auth J] Focus chain XA [auth K] Focus chain ZA [auth L]