9GCS

Rho-ATP-Psu complex II

PDB DOI: https://doi.org/10.2210/pdb9GCS/pdb
EM Map EMD-51235: EMDB EMDataResource

Classification: TRANSCRIPTION
Organism(s): Escherichia coli, Enterobacteria phage P4
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2024-08-02 Released: 2024-10-09
Deposition Author(s): Gjorgjevikj, D., Wahl, M.C., Hilal, T., Loll, B.
Funding Organization(s): German Research Foundation (DFG)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.90 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Rho-ATP-Psu complex II

Gjorgjevikj, D., Wahl, M.C., Hilal, T., Loll, B.

To be published.

Macromolecule Content

Total Structure Weight: 785.15 kDa
Atom Count: 54,740
Modelled Residue Count: 6,898
Deposited Residue Count: 6,928
Unique protein chains: 2

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Transcription termination factor Rho	A [auth C] B [auth D] C [auth E] D [auth J] E [auth K] A [auth C], B [auth D], C [auth E], D [auth J], E [auth K], F [auth L], G [auth M], H [auth O], S [auth B], T [auth G], U [auth N], V [auth F]	419	Escherichia coli	Mutation(s): 0 Gene Names: rho, nitA, psuA, rnsC, sbaA, tsu, b3783, JW3756 EC: 3.6.4
UniProt
Find proteins for P0AG30 (Escherichia coli (strain K12)) Explore P0AG30 Go to UniProtKB: P0AG30
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P0AG30
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Polarity suppression protein	I [auth c] J [auth d] K [auth e] L [auth f] M [auth g] I [auth c], J [auth d], K [auth e], L [auth f], M [auth g], N [auth h], O [auth i], P [auth j], Q [auth k], R [auth l]	190	Enterobacteria phage P4	Mutation(s): 0 Gene Names: psu
UniProt
Find proteins for P05460 (Enterobacteria phage P4) Explore P05460 Go to UniProtKB: P05460
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P05460
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ATP (Subject of Investigation/LOI) Query on ATP Download Ideal Coordinates CCD File SDF format, chain AA [auth E] SDF format, chain GA [auth L] SDF format, chain IA [auth M] SDF format, chain KA [auth O] SDF format, chain MA [auth B] SDF format, chain QA [auth N] SDF format, chain W [auth C] SDF format, chain Y [auth D] SDF format, chain CA [auth J] SDF format, chain EA [auth K] SDF format, chain OA [auth G] SDF format, chain SA [auth F] MOL2 format, chain AA [auth E] MOL2 format, chain GA [auth L] MOL2 format, chain IA [auth M] MOL2 format, chain KA [auth O] MOL2 format, chain MA [auth B] MOL2 format, chain QA [auth N] MOL2 format, chain W [auth C] MOL2 format, chain Y [auth D] MOL2 format, chain CA [auth J] MOL2 format, chain EA [auth K] MOL2 format, chain OA [auth G] MOL2 format, chain SA [auth F] mmCIF format, chain AA [auth E] mmCIF format, chain GA [auth L] mmCIF format, chain IA [auth M] mmCIF format, chain KA [auth O] mmCIF format, chain MA [auth B] mmCIF format, chain QA [auth N] mmCIF format, chain W [auth C] mmCIF format, chain Y [auth D] mmCIF format, chain CA [auth J] mmCIF format, chain EA [auth K] mmCIF format, chain OA [auth G] mmCIF format, chain SA [auth F]	AA [auth E] CA [auth J] EA [auth K] GA [auth L] IA [auth M] AA [auth E], CA [auth J], EA [auth K], GA [auth L], IA [auth M], KA [auth O], MA [auth B], OA [auth G], QA [auth N], SA [auth F], W [auth C], Y [auth D]	ADENOSINE-5'-TRIPHOSPHATE C₁₀ H₁₆ N₅ O₁₃ P₃ ZKHQWZAMYRWXGA-KQYNXXCUSA-N		Interactions Focus chain AA [auth E] Focus chain CA [auth J] Focus chain EA [auth K] Focus chain GA [auth L] Focus chain IA [auth M] Focus chain KA [auth O] Focus chain MA [auth B] Focus chain OA [auth G] Focus chain QA [auth N] Focus chain SA [auth F] Focus chain W [auth C] Focus chain Y [auth D] Interactions & Density Focus chain AA [auth E] Focus chain CA [auth J] Focus chain EA [auth K] Focus chain GA [auth L] Focus chain IA [auth M] Focus chain KA [auth O] Focus chain MA [auth B] Focus chain OA [auth G] Focus chain QA [auth N] Focus chain SA [auth F] Focus chain W [auth C] Focus chain Y [auth D]
MG (Subject of Investigation/LOI) Query on MG Download Ideal Coordinates CCD File SDF format, chain BA [auth E] SDF format, chain DA [auth J] SDF format, chain FA [auth K] SDF format, chain HA [auth L] SDF format, chain JA [auth M] SDF format, chain NA [auth B] SDF format, chain PA [auth G] SDF format, chain RA [auth N] SDF format, chain TA [auth F] SDF format, chain Z [auth D] SDF format, chain LA [auth O] SDF format, chain X [auth C] MOL2 format, chain BA [auth E] MOL2 format, chain DA [auth J] MOL2 format, chain FA [auth K] MOL2 format, chain HA [auth L] MOL2 format, chain JA [auth M] MOL2 format, chain NA [auth B] MOL2 format, chain PA [auth G] MOL2 format, chain RA [auth N] MOL2 format, chain TA [auth F] MOL2 format, chain Z [auth D] MOL2 format, chain LA [auth O] MOL2 format, chain X [auth C] mmCIF format, chain BA [auth E] mmCIF format, chain DA [auth J] mmCIF format, chain FA [auth K] mmCIF format, chain HA [auth L] mmCIF format, chain JA [auth M] mmCIF format, chain NA [auth B] mmCIF format, chain PA [auth G] mmCIF format, chain RA [auth N] mmCIF format, chain TA [auth F] mmCIF format, chain Z [auth D] mmCIF format, chain LA [auth O] mmCIF format, chain X [auth C]	BA [auth E] DA [auth J] FA [auth K] HA [auth L] JA [auth M] BA [auth E], DA [auth J], FA [auth K], HA [auth L], JA [auth M], LA [auth O], NA [auth B], PA [auth G], RA [auth N], TA [auth F], X [auth C], Z [auth D]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain BA [auth E] Focus chain DA [auth J] Focus chain FA [auth K] Focus chain HA [auth L] Focus chain JA [auth M] Focus chain LA [auth O] Focus chain NA [auth B] Focus chain PA [auth G] Focus chain RA [auth N] Focus chain TA [auth F] Focus chain X [auth C] Focus chain Z [auth D] Interactions & Density Focus chain BA [auth E] Focus chain DA [auth J] Focus chain FA [auth K] Focus chain HA [auth L] Focus chain JA [auth M] Focus chain LA [auth O] Focus chain NA [auth B] Focus chain PA [auth G] Focus chain RA [auth N] Focus chain TA [auth F] Focus chain X [auth C] Focus chain Z [auth D]