Nanobody-mediated activation and inhibition of Staphylococcus aureus MazF
Prolic-Kalinsek, M., Zorzini, V., Haesaerts, S., De Bruyn, P., Loris, R.To be published.
Experimental Data Snapshot
Starting Models: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Endoribonuclease MazF | 133 | Staphylococcus aureus | Mutation(s): 0  Gene Names: mazF, SA1873 EC: 3.1 | ||
UniProt | |||||
Find proteins for Q2FWI8 (Staphylococcus aureus (strain NCTC 8325 / PS 47)) Explore Q2FWI8  Go to UniProtKB:  Q2FWI8 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q2FWI8 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Nanobody 6 | 138 | Lama glama | Mutation(s): 0  | ||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PGE Query on PGE | G [auth A] | TRIETHYLENE GLYCOL C6 H14 O4 ZIBGPFATKBEMQZ-UHFFFAOYSA-N | |||
PG0 Query on PG0 | K [auth D] | 2-(2-METHOXYETHOXY)ETHANOL C5 H12 O3 SBASXUCJHJRPEV-UHFFFAOYSA-N | |||
CD Query on CD | E [auth A], F [auth A], H [auth B], I [auth D], J [auth D] | CADMIUM ION Cd WLZRMCYVCSSEQC-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 60.14 | α = 90 |
b = 60.14 | β = 90 |
c = 246.24 | γ = 120 |
Software Name | Purpose |
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PHENIX | refinement |
XDS | data reduction |
XDS | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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Vrije Universiteit Brussel | Belgium | SRP13 |