Download MendeleyStructural Insights into the NMN Complex of Nicotinate Nucleotide Adenylyltransferase from Enterococcus faecium via Co-Crystallization Studies
Jeje, O.A., Pandian, R., Sayed, Y., Achilonu, I.A.To be published.
9FYB
Structural Insights into the NMN Complex of Nicotinate Nucleotide Adenylyltransferase from Enterococcus faecium via Co-Crystallization Studies
- PDB DOI: https://doi.org/10.2210/pdb9FYB/pdb
- Classification: TRANSFERASE
- Organism(s): Enterococcus faecium
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2024-07-03 Released: 2024-07-17
- Funding Organization(s): Science and Technology Funding Council, South African Medical Research Council self-initiated research grant (SAMRC SIR Grant)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.84 Å
- R-Value Free: 0.268
- R-Value Work: 0.209
- R-Value Observed: 0.212
Starting Model: in silico
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This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Probable nicotinate-nucleotide adenylyltransferase | 214 | Enterococcus faecium | Mutation(s): 0 Gene Names: nadD, nadD_1, B1P95_04405, BU194_05695, DTPHA_1401727, HMPREF3199_01612 EC: 2.7.7.18 |  | |
UniProt | |||||
Find proteins for A0A133MWI0 (Enterococcus faecium) Explore A0A133MWI0 Go to UniProtKB: A0A133MWI0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A133MWI0 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 5 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NMN (Subject of Investigation/LOI) Query on NMN | C [auth A] | BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE C11 H16 N2 O8 P DAYLJWODMCOQEW-TURQNECASA-O |  | ||
| PGE Query on PGE | D [auth A] | TRIETHYLENE GLYCOL C6 H14 O4 ZIBGPFATKBEMQZ-UHFFFAOYSA-N |  | ||
| PEG Query on PEG | E [auth A], F [auth A] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N |  | ||
| PO4 Query on PO4 | G [auth A] H [auth A] I [auth A] J [auth A] K [auth A] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
| MG Query on MG | L [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.84 Å
- R-Value Free: 0.268
- R-Value Work: 0.209
- R-Value Observed: 0.212
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 94.449 | α = 90 |
| b = 107.344 | β = 128.96 |
| c = 62.344 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| DIALS | data reduction |
| DIALS | data scaling |
| MrBUMP | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2024-07-17 Deposition Author(s): Pandian, R., Jeje, O.A., Sayed, Y., Achilonu, I.A.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Science and Technology Funding Council | United Kingdom | ST/R002754/1 |
| South African Medical Research Council self-initiated research grant (SAMRC SIR Grant) | South Africa | ACHL019 |
Revision History (Full details and data files)
- Version 1.0: 2024-07-17
Type: Initial release
