9FXO | pdb_00009fxo

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA : LM32CS1C1 M2 OE MUTANT

• PDB DOI: https://doi.org/10.2210/pdb9FXO/pdb
• NAKB: 9FXO
• EM Map EMD-50852: EMDB EMDataResource

• Classification: RIBOSOME
• Organism(s): Leishmania major strain Friedlin
• Mutation(s): No 


• Deposited: 2024-07-02 Released: 2025-07-23 
• Deposition Author(s): Rajan, K.S., Yonath, A.
• Funding Organization(s): European Research Council (ERC)

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 2.25 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA : LM32CS1C1 M2 OE MUTANT

Rajan, K.S., Yonath, A.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 76-mer - AA1AB1AC1AD1AE1AF1AG1AH1AI1AJ1AK1AL1AM1AN1AO1AP1AQ1AR1AS1AT1AU1AV1AW1AX1AY1AZ1Aa1Ab1Ac1Ad1Ae1Af1Ag1Ah1Ai1Aj1Ak1Al1Am1An1Ao1Ap1Aq1Ar1As1At1Au1Av1Aw1Ax1Ay1Az1BA1BB1BC1BD1BE1BF1BG1BH1BI1BJ1BK1BL1BM1BN1BO1BP1BQ1BR1BS1BT1BU1BV1BW1BX1 Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Hetero 76-mer - AA2AB2AC1AD1AE1AF1AG1AH1AI1AJ1AK1AL1AM1AN1AO1AP1AQ1AR1AS1AT1AU1AV1AW1AX1AY1AZ1Aa1Ab1Ac1Ad1Ae1Af1Ag1Ah1Ai1Aj1Ak1Al1Am1An1Ao1Ap1Aq1Ar1As1At1Au1Av1Aw1Ax1Ay1Az1BA1BB1BC1BD1BE1BF1BG1BH1BI1BJ1BK1BL1BM1BN1BO1BP1BQ1BR1BS1BT1BU1BV1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: electron microscopy

Macromolecule Content 

• Total Structure Weight: 3,633.51 kDa 
• Atom Count: 218,491 
• Modeled Residue Count: 17,415 
• Deposited Residue Count: 19,583 
• Unique protein chains: 76
• Unique nucleic acid chains: 12

Macromolecules

Entity ID: 9
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative 60S ribosomal protein L2	I [auth LA]	260	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4FWX5 (Leishmania major) Explore Q4FWX5  Go to UniProtKB:  Q4FWX5

Entity ID: 10
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative ribosomal protein L3	J [auth LB]	419	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4Q2Q6 (Leishmania major) Explore Q4Q2Q6  Go to UniProtKB:  Q4Q2Q6

Entity ID: 11
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative ribosomal protein L1a	K [auth LC]	373	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for E9ADW5 (Leishmania major) Explore E9ADW5  Go to UniProtKB:  E9ADW5

Entity ID: 12
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L11	L [auth LD]	188	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for P48157 (Leishmania major) Explore P48157  Go to UniProtKB:  P48157

Entity ID: 13
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative 60S ribosomal protein L9	M [auth LE]	190	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4QC91 (Leishmania major) Explore Q4QC91  Go to UniProtKB:  Q4QC91

Entity ID: 14
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative 60S ribosomal protein L6	N [auth LF]	195	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4Q4D3 (Leishmania major) Explore Q4Q4D3  Go to UniProtKB:  Q4Q4D3

Entity ID: 15
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L7a	O [auth LG]	264	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4QIP1 (Leishmania major) Explore Q4QIP1  Go to UniProtKB:  Q4QIP1

Entity ID: 16
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative 60S ribosomal protein L13a	P [auth LH]	222	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4QFG2 (Leishmania major) Explore Q4QFG2  Go to UniProtKB:  Q4QFG2

Entity ID: 17
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative 60S ribosomal protein L13	Q [auth LI]	220	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for E9AEA8 (Leishmania major) Explore E9AEA8  Go to UniProtKB:  E9AEA8

Entity ID: 18
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative 60S ribosomal protein L23	R [auth LJ]	139	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for E9AFK3 (Leishmania major) Explore E9AFK3  Go to UniProtKB:  E9AFK3

Entity ID: 19
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative 40S ribosomal protein L14	S [auth LK]	175	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4QBJ1 (Leishmania major) Explore Q4QBJ1  Go to UniProtKB:  Q4QBJ1

Entity ID: 20
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative 60S ribosomal protein L27A/L29	T [auth LL]	145	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for E9AFK0 (Leishmania major) Explore E9AFK0  Go to UniProtKB:  E9AFK0

Entity ID: 21
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein L15	U [auth LM]	204	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4Q6S3 (Leishmania major) Explore Q4Q6S3  Go to UniProtKB:  Q4Q6S3

Entity ID: 22
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative 60S ribosomal protein L10	V [auth LN]	213	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for O97213 (Leishmania major) Explore O97213  Go to UniProtKB:  O97213

Entity ID: 23
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative 60S ribosomal protein L5	W [auth LO]	305	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for E9AF10 (Leishmania major) Explore E9AF10  Go to UniProtKB:  E9AF10

Entity ID: 24
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L18	X [auth LP]	198	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4QG98 (Leishmania major) Explore Q4QG98  Go to UniProtKB:  Q4QG98

Entity ID: 25
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative 60S ribosomal protein L19	Y [auth LQ]	254	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4QJ37 (Leishmania major) Explore Q4QJ37  Go to UniProtKB:  Q4QJ37

Entity ID: 26
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L18a	Z [auth LR]	179	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4Q5J4 (Leishmania major) Explore Q4Q5J4  Go to UniProtKB:  Q4Q5J4

Entity ID: 27
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative 60S ribosomal protein L21	AA [auth LS]	159	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4QEX4 (Leishmania major) Explore Q4QEX4  Go to UniProtKB:  Q4QEX4

Entity ID: 28
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative 60S ribosomal protein L17	BA [auth LT]	166	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4QAX6 (Leishmania major) Explore Q4QAX6  Go to UniProtKB:  Q4QAX6

Entity ID: 29
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative 60S ribosomal protein L22	CA [auth LU]	129	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4Q0X2 (Leishmania major) Explore Q4Q0X2  Go to UniProtKB:  Q4Q0X2

Entity ID: 30
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative 60S ribosomal protein L23a	DA [auth LV]	145	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4QJ20 (Leishmania major) Explore Q4QJ20  Go to UniProtKB:  Q4QJ20

Entity ID: 31
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative 60S ribosomal protein L26	EA [auth LW]	143	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4QAC5 (Leishmania major) Explore Q4QAC5  Go to UniProtKB:  Q4QAC5

Entity ID: 32
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative ribosomal protein L24	FA [auth LX]	124	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4Q1W6 (Leishmania major) Explore Q4Q1W6  Go to UniProtKB:  Q4Q1W6

Entity ID: 33
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L27	GA [auth LY]	134	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4Q504 (Leishmania major) Explore Q4Q504  Go to UniProtKB:  Q4Q504

Entity ID: 34
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative 60S ribosomal protein L28	HA [auth LZ]	147	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4QGW7 (Leishmania major) Explore Q4QGW7  Go to UniProtKB:  Q4QGW7

Entity ID: 35
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative 60S ribosomal protein L35	IA [auth La]	127	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4Q8V7 (Leishmania major) Explore Q4Q8V7  Go to UniProtKB:  Q4Q8V7

Entity ID: 36
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L29	JA [auth Lb]	70	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4Q178 (Leishmania major) Explore Q4Q178  Go to UniProtKB:  Q4Q178

Entity ID: 37
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative 60S ribosomal protein L7	KA [auth Lc]	252	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4Q9H4 (Leishmania major) Explore Q4Q9H4  Go to UniProtKB:  Q4Q9H4

Entity ID: 38
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L30	LA [auth Ld]	104	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for E9AEK1 (Leishmania major) Explore E9AEK1  Go to UniProtKB:  E9AEK1

Entity ID: 39
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative 60S ribosomal subunit protein L31	MA [auth Le]	188	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for E9AFF2 (Leishmania major) Explore E9AFF2  Go to UniProtKB:  E9AFF2

Entity ID: 40
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L32	NA [auth Lf]	133	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4QC11 (Leishmania major) Explore Q4QC11  Go to UniProtKB:  Q4QC11

Entity ID: 41
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative ribosomal protein l35a	OA [auth Lg]	144	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4QHL3 (Leishmania major) Explore Q4QHL3  Go to UniProtKB:  Q4QHL3

Entity ID: 42
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative 60S ribosomal protein L34	PA [auth Lh]	168	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4QDP9 (Leishmania major) Explore Q4QDP9  Go to UniProtKB:  Q4QDP9

Entity ID: 43
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative 60S Ribosomal protein L36	QA [auth Li]	105	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4QCE1 (Leishmania major) Explore Q4QCE1  Go to UniProtKB:  Q4QCE1

Entity ID: 44
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein L37	RA [auth Lj]	83	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for E9AEH2 (Leishmania major) Explore E9AEH2  Go to UniProtKB:  E9AEH2

Entity ID: 45
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative ribosomal protein L38	SA [auth Lk]	83	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4Q8X0 (Leishmania major) Explore Q4Q8X0  Go to UniProtKB:  Q4Q8X0

Entity ID: 46
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative 60S ribosomal protein L39	TA [auth Ll]	51	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4QEQ0 (Leishmania major) Explore Q4QEQ0  Go to UniProtKB:  Q4QEQ0

Entity ID: 47
Molecule	Chains	Sequence Length	Organism	Details	Image
Ubiquitin-60S ribosomal protein L40	UA [auth Lm]	128	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for P69201 (Leishmania major) Explore P69201  Go to UniProtKB:  P69201

Entity ID: 48
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein L41	VA [auth Ln]	34	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for A0A0M9FZM0 (Leptomonas pyrrhocoris) Explore A0A0M9FZM0  Go to UniProtKB:  A0A0M9FZM0

Entity ID: 49
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L37a	WA [auth Lo]	92	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4QC01 (Leishmania major) Explore Q4QC01  Go to UniProtKB:  Q4QC01

Entity ID: 50
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative 60S ribosomal protein L44	XA [auth Lp]	106	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4Q3L3 (Leishmania major) Explore Q4Q3L3  Go to UniProtKB:  Q4Q3L3

Entity ID: 54
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S3a	CB [auth SA]	264	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4FX73 (Leishmania major) Explore Q4FX73  Go to UniProtKB:  Q4FX73

Entity ID: 55
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein SA	DB [auth SB]	246	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4Q0Q0 (Leishmania major) Explore Q4Q0Q0  Go to UniProtKB:  Q4Q0Q0

Entity ID: 56
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative 40S ribosomal protein S3	EB [auth SC]	219	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4Q4A0 (Leishmania major) Explore Q4Q4A0  Go to UniProtKB:  Q4Q4A0

Entity ID: 57
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative 40S ribosomal protein S9	FB [auth SD]	190	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4QIM3 (Leishmania major) Explore Q4QIM3  Go to UniProtKB:  Q4QIM3

Entity ID: 58
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S4	GB [auth SE]	273	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4QG31 (Leishmania major) Explore Q4QG31  Go to UniProtKB:  Q4QG31

Entity ID: 59
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S2	HB [auth SF]	265	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4QDL5 (Leishmania major) Explore Q4QDL5  Go to UniProtKB:  Q4QDL5

Entity ID: 60
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S6	IB [auth SG]	249	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q9NE83 (Leishmania major) Explore Q9NE83  Go to UniProtKB:  Q9NE83

Entity ID: 61
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S5	JB [auth SH]	190	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q868B1 (Leishmania major) Explore Q868B1  Go to UniProtKB:  Q868B1

Entity ID: 62
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S7	KB [auth SI]	200	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for E9AC32 (Leishmania major) Explore E9AC32  Go to UniProtKB:  E9AC32

Entity ID: 63
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative 40S ribosomal protein S15A	LB [auth SJ]	130	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4QGW3 (Leishmania major) Explore Q4QGW3  Go to UniProtKB:  Q4QGW3

Entity ID: 64
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S8	MB [auth SK]	220	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for P25204 (Leishmania major) Explore P25204  Go to UniProtKB:  P25204

Entity ID: 65
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative 40S ribosomal protein S16	NB [auth SL]	149	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4Q9A5 (Leishmania major) Explore Q4Q9A5  Go to UniProtKB:  Q4Q9A5

Entity ID: 66
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative ribosomal protein S20	OB [auth SM]	116	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4Q8G4 (Leishmania major) Explore Q4Q8G4  Go to UniProtKB:  Q4Q8G4

Entity ID: 67
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative 40S ribosomal protein S10	PB [auth SN]	168	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4Q1X7 (Leishmania major) Explore Q4Q1X7  Go to UniProtKB:  Q4Q1X7

Entity ID: 68
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S14	QB [auth SO]	144	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4Q8H1 (Leishmania major) Explore Q4Q8H1  Go to UniProtKB:  Q4Q8H1

Entity ID: 69
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative 40S ribosomal protein S23	RB [auth SP]	143	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4QC89 (Leishmania major) Explore Q4QC89  Go to UniProtKB:  Q4QC89

Entity ID: 70
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S12	SB [auth SQ]	141	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4QG97 (Leishmania major) Explore Q4QG97  Go to UniProtKB:  Q4QG97

Entity ID: 71
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative 40S ribosomal protein S18	TB [auth SR]	153	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4Q1Y3 (Leishmania major) Explore Q4Q1Y3  Go to UniProtKB:  Q4Q1Y3

Entity ID: 72
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative ribosomal protein S29	UB [auth SS]	57	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4Q817 (Leishmania major) Explore Q4Q817  Go to UniProtKB:  Q4Q817

Entity ID: 73
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative 40S ribosomal protein S13	VB [auth ST]	151	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4Q3M1 (Leishmania major) Explore Q4Q3M1  Go to UniProtKB:  Q4Q3M1

Entity ID: 74
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative 40S ribosomal protein S11	WB [auth SU]	173	Leishmania major strain Friedlin	Mutation(s): 0

Entity ID: 75
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative 40S ribosomal protein S17	XB [auth SV]	143	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4Q806 (Leishmania major) Explore Q4Q806  Go to UniProtKB:  Q4Q806

Entity ID: 76
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative 40S ribosomal protein S15	YB [auth SW]	152	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4QBV0 (Leishmania major) Explore Q4QBV0  Go to UniProtKB:  Q4QBV0

Entity ID: 77
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S19-like protein	ZB [auth SX]	161	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for E9AEE8 (Leishmania major) Explore E9AEE8  Go to UniProtKB:  E9AEE8

Entity ID: 78
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative 40S ribosomal protein S21	AC [auth SY]	164	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4QH01 (Leishmania major) Explore Q4QH01  Go to UniProtKB:  Q4QH01

Entity ID: 79
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S24	BC [auth SZ]	137	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4Q1D2 (Leishmania major) Explore Q4Q1D2  Go to UniProtKB:  Q4Q1D2

Entity ID: 80
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S25	CC [auth Sa]	120	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4Q9X4 (Leishmania major) Explore Q4Q9X4  Go to UniProtKB:  Q4Q9X4

Entity ID: 81
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S26	DC [auth Sb]	112	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4Q8L6 (Leishmania major) Explore Q4Q8L6  Go to UniProtKB:  Q4Q8L6

Entity ID: 82
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative 40S ribosomal protein S27-1	EC [auth Sc]	86	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4Q140 (Leishmania major) Explore Q4Q140  Go to UniProtKB:  Q4Q140

Entity ID: 83
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative 40S ribosomal protein S33	FC [auth Sd]	87	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4Q931 (Leishmania major) Explore Q4Q931  Go to UniProtKB:  Q4Q931

Entity ID: 84
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S30	GC [auth Se]	66	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4Q7P0 (Leishmania major) Explore Q4Q7P0  Go to UniProtKB:  Q4Q7P0

Entity ID: 85
Molecule	Chains	Sequence Length	Organism	Details	Image
Ubiquitin-60S ribosomal protein L40	HC [auth Sf]	152	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4QFK7 (Leishmania major) Explore Q4QFK7  Go to UniProtKB:  Q4QFK7

Entity ID: 86
Molecule	Chains	Sequence Length	Organism	Details	Image
Guanine nucleotide-binding protein subunit beta-like protein	IC [auth Sg]	312	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4Q7Y7 (Leishmania major) Explore Q4Q7Y7  Go to UniProtKB:  Q4Q7Y7

Entity ID: 87
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative RNA binding protein	JC [auth Sh]	235	Leishmania major strain Friedlin	Mutation(s): 0
UniProt
Find proteins for Q4Q5K7 (Leishmania major) Explore Q4Q5K7  Go to UniProtKB:  Q4Q5K7

Entity ID: 1
Molecule	Chains	Length	Organism	Image
LSUa_rRNA_chain_1	A [auth L1]	1,782	Leishmania major strain Friedlin

Entity ID: 2
Molecule	Chains	Length	Organism	Image
LSUb_rRNA_chain_2	B [auth L2]	1,526	Leishmania major strain Friedlin

Entity ID: 3
Molecule	Chains	Length	Organism	Image
SR1_chain_3	C [auth L3]	216	Leishmania major strain Friedlin

Entity ID: 4
Molecule	Chains	Length	Organism	Image
SR2_chain_4	D [auth L4]	184	Leishmania major strain Friedlin

Entity ID: 5
Molecule	Chains	Length	Organism	Image
SR4_chain_5	E [auth L5]	135	Leishmania major strain Friedlin

Entity ID: 6
Molecule	Chains	Length	Organism	Image
SR6_chain_6	F [auth L6]	73	Leishmania major strain Friedlin

Entity ID: 7
Molecule	Chains	Length	Organism	Image
5.8S_rRNA_chain_7	G [auth L7]	171	Leishmania major strain Friedlin

Entity ID: 8
Molecule	Chains	Length	Organism	Image
5S_rRNA_chain_8	H [auth L8]	124	Leishmania major strain Friedlin

Entity ID: 51
Molecule	Chains	Length	Organism	Image
SSU_rRNA_chain_S1	YA [auth S1]	2,204	Leishmania major strain Friedlin

Entity ID: 52
Molecule	Chains	Length	Organism	Image
tRNA	BB [auth S4], ZA [auth S2]	76	Leishmania major strain Friedlin

Entity ID: 53
Molecule	Chains	Length	Organism	Image
tRNA	AB [auth S3]	77	Leishmania major strain Friedlin

Entity ID: 88
Molecule	Chains	Length	Organism	Image
mRNA	KC [auth S5]	13	Leishmania major strain Friedlin

Small Molecules

Ligands 7 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
PAR	EO [auth L2], FO [auth L2], GJ [auth L1], OW [auth S1], PW [auth S1], UP [auth L7]	PAROMOMYCIN C23 H45 N5 O14 UOZODPSAJZTQNH-LSWIJEOBSA-N
SPD	AR [auth S1], BR [auth S1], HJ [auth L2], IJ [auth L2], JQ [auth LM], LC [auth L1], MC [auth L1], NC [auth L1], OC [auth L1], PC [auth L1], QC [auth L1], QW [auth S1], RC [auth L1], SC [auth L1], TC [auth L1], UC [auth L1], VC [auth L1], WC [auth L1], XC [auth L1], YC [auth L1], ZC [auth L1]	SPERMIDINE C7 H19 N3 ATHGHQPFGPMSJY-UHFFFAOYSA-N
PUT	AJ [auth L1], AO [auth L2], BJ [auth L1], BO [auth L2], CJ [auth L1], CO [auth L2], DJ [auth L1], DO [auth L2], DP [auth L4], EJ [auth L1], FJ [auth L1], KP [auth L5], MW [auth S1], NW [auth S1], ZI [auth L1], ZN [auth L2]	1,4-DIAMINOBUTANE C4 H12 N2 KIDHWZJUCRJVML-UHFFFAOYSA-N
ZN	IQ [auth LK], UW [auth SS], VQ [auth Lj], XQ [auth Lm], YQ [auth Lo], YW [auth Sb], ZQ [auth Lp]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N
K	AP [auth L4], AW [auth S1], BP [auth L4], BW [auth S1], CP [auth L4], CW [auth S1], DQ [auth LB], DW [auth S1], EQ [auth LC], EW [auth S1], FI [auth L1], FQ [auth LC], FW [auth S1], GI [auth L1], GW [auth S1], HI [auth L1], HW [auth S1], II [auth L1], IW [auth S1], JI [auth L1], JW [auth S1], KI [auth L1], KQ [auth LM], KW [auth S1], LI [auth L1], LN [auth L2], LW [auth S1], MI [auth L1], MN [auth L2], NI [auth L1], NN [auth L2], OI [auth L1], ON [auth L2], PI [auth L1], PN [auth L2], PQ [auth LV], QI [auth L1], QN [auth L2], QQ [auth Le], RI [auth L1], RN [auth L2], SI [auth L1], SN [auth L2], TI [auth L1], TN [auth L2], TP [auth L7], TV [auth S1], UI [auth L1], UN [auth L2], UV [auth S1], VI [auth L1], VN [auth L2], VV [auth S1], WI [auth L1], WN [auth L2], WQ [auth Ll], WV [auth S1], XI [auth L1], XN [auth L2], XV [auth S1], YI [auth L1], YN [auth L2], YV [auth S1], ZO [auth L4], ZV [auth S1]	POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N
MG	AD [auth L1], AE [auth L1], AF [auth L1], AG [auth L1], AH [auth L1], AK [auth L2], AL [auth L2], AM [auth L2], AQ [auth L8], AS [auth S1], AT [auth S1], AU [auth S1], AV [auth S1], BD [auth L1], BE [auth L1], BF [auth L1], BG [auth L1], BH [auth L1], BK [auth L2], BL [auth L2], BM [auth L2], BQ [auth LA], BS [auth S1], BT [auth S1], BU [auth S1], BV [auth S1], CD [auth L1], CE [auth L1], CF [auth L1], CG [auth L1], CH [auth L1], CK [auth L2], CL [auth L2], CM [auth L2], CQ [auth LA], CR [auth S1], CS [auth S1], CT [auth S1], CU [auth S1], CV [auth S1], DD [auth L1], DE [auth L1], DF [auth L1], DG [auth L1], DH [auth L1], DK [auth L2], DL [auth L2], DM [auth L2], DR [auth S1], DS [auth S1], DT [auth S1], DU [auth S1], DV [auth S1], ED [auth L1], EE [auth L1], EF [auth L1], EG [auth L1], EH [auth L1], EK [auth L2], EL [auth L2], EM [auth L2], EP [auth L5], ER [auth S1], ES [auth S1], ET [auth S1], EU [auth S1], EV [auth S1], FD [auth L1], FE [auth L1], FF [auth L1], FG [auth L1], FH [auth L1], FK [auth L2], FL [auth L2], FM [auth L2], FP [auth L5], FR [auth S1], FS [auth S1], FT [auth S1], FU [auth S1], FV [auth S1], GD [auth L1], GE [auth L1], GF [auth L1], GG [auth L1], GH [auth L1], GK [auth L2], GL [auth L2], GM [auth L2], GO [auth L3], GP [auth L5], GQ [auth LG], GR [auth S1], GS [auth S1], GT [auth S1], GU [auth S1], GV [auth S1], HD [auth L1], HE [auth L1], HF [auth L1], HG [auth L1], HH [auth L1], HK [auth L2], HL [auth L2], HM [auth L2], HO [auth L3], HP [auth L5], HQ [auth LJ], HR [auth S1], HS [auth S1], HT [auth S1], HU [auth S1], ID [auth L1], IE [auth L1], IF [auth L1], IG [auth L1], IH [auth L1], IK [auth L2], IL [auth L2], IM [auth L2], IO [auth L3], IP [auth L5], IR [auth S1], IS [auth S1], IT [auth S1], IU [auth S1], JD [auth L1], JE [auth L1], JF [auth L1], JG [auth L1], JH [auth L1], JJ [auth L2], JK [auth L2], JL [auth L2], JM [auth L2], JO [auth L3], JP [auth L5], JR [auth S1], JS [auth S1], JT [auth S1], JU [auth S1], KD [auth L1], KE [auth L1], KF [auth L1], KG [auth L1], KH [auth L1], KJ [auth L2], KK [auth L2], KL [auth L2], KM [auth L2], KO [auth L3], KR [auth S1], KS [auth S1], KT [auth S1], KU [auth S1], LD [auth L1], LE [auth L1], LF [auth L1], LG [auth L1], LH [auth L1], LJ [auth L2], LK [auth L2], LL [auth L2], LM [auth L2], LP [auth L6], LQ [auth LN], LR [auth S1], LS [auth S1], LT [auth S1], LU [auth S1], MD [auth L1], ME [auth L1], MF [auth L1], MG [auth L1], MH [auth L1], MJ [auth L2], MK [auth L2], ML [auth L2], MM [auth L2], MO [auth L4], MP [auth L6], MR [auth S1], MS [auth S1], MT [auth S1], MU [auth S1], ND [auth L1], NE [auth L1], NF [auth L1], NG [auth L1], NH [auth L1], NJ [auth L2], NK [auth L2], NL [auth L2], NM [auth L2], NO [auth L4], NP [auth L7], NQ [auth LS], NR [auth S1], NS [auth S1], NT [auth S1], NU [auth S1], OD [auth L1], OE [auth L1], OF [auth L1], OG [auth L1], OH [auth L1], OJ [auth L2], OK [auth L2], OL [auth L2], OM [auth L2], OO [auth L4], OP [auth L7], OQ [auth LT], OR [auth S1], OS [auth S1], OT [auth S1], OU [auth S1], PD [auth L1], PE [auth L1], PF [auth L1], PG [auth L1], PH [auth L1], PJ [auth L2], PK [auth L2], PL [auth L2], PM [auth L2], PO [auth L4], PP [auth L7], PR [auth S1], PS [auth S1], PT [auth S1], PU [auth S1], QD [auth L1], QE [auth L1], QF [auth L1], QG [auth L1], QJ [auth L2], QK [auth L2], QL [auth L2], QM [auth L2], QO [auth L4], QP [auth L7], QR [auth S1], QS [auth S1], QT [auth S1], QU [auth S1], RD [auth L1], RE [auth L1], RF [auth L1], RG [auth L1], RJ [auth L2], RK [auth L2], RL [auth L2], RM [auth L2], RO [auth L4], RQ [auth Lf], RR [auth S1], RS [auth S1], RT [auth S1], RU [auth S1], RW [auth S3], SD [auth L1], SE [auth L1], SF [auth L1], SG [auth L1], SJ [auth L2], SK [auth L2], SL [auth L2], SM [auth L2], SO [auth L4], SR [auth S1], SS [auth S1], ST [auth S1], SU [auth S1], SW [auth SG], TD [auth L1], TE [auth L1], TF [auth L1], TG [auth L1], TJ [auth L2], TK [auth L2], TL [auth L2], TM [auth L2], TO [auth L4], TQ [auth Lh], TR [auth S1], TS [auth S1], TT [auth S1], TU [auth S1], TW [auth SO], UD [auth L1], UE [auth L1], UF [auth L1], UG [auth L1], UJ [auth L2], UK [auth L2], UL [auth L2], UM [auth L2], UO [auth L4], UQ [auth Lh], UR [auth S1], US [auth S1], UT [auth S1], UU [auth S1], VD [auth L1], VE [auth L1], VF [auth L1], VG [auth L1], VJ [auth L2], VK [auth L2], VL [auth L2], VM [auth L2], VO [auth L4], VP [auth L8], VR [auth S1], VS [auth S1], VT [auth S1], VU [auth S1], WD [auth L1], WE [auth L1], WF [auth L1], WG [auth L1], WJ [auth L2], WK [auth L2], WL [auth L2], WM [auth L2], WP [auth L8], WR [auth S1], WS [auth S1], WT [auth S1], WU [auth S1], WW [auth ST], XD [auth L1], XE [auth L1], XF [auth L1], XG [auth L1], XJ [auth L2], XK [auth L2], XL [auth L2], XM [auth L2], XP [auth L8], XR [auth S1], XS [auth S1], XT [auth S1], XU [auth S1], XW [auth SX], YD [auth L1], YE [auth L1], YF [auth L1], YG [auth L1], YJ [auth L2], YK [auth L2], YL [auth L2], YM [auth L2], YP [auth L8], YR [auth S1], YS [auth S1], YT [auth S1], YU [auth S1], ZD [auth L1], ZE [auth L1], ZF [auth L1], ZG [auth L1], ZJ [auth L2], ZK [auth L2], ZL [auth L2], ZP [auth L8], ZR [auth S1], ZS [auth S1], ZT [auth S1], ZU [auth S1], ZW [auth Sb]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N
NA	AI [auth L1], AN [auth L2], BI [auth L1], BN [auth L2], CI [auth L1], CN [auth L2], DI [auth L1], DN [auth L2], EI [auth L1], EN [auth L2], FN [auth L2], GN [auth L2], HN [auth L2], HV [auth S1], IN [auth L2], IV [auth S1], JN [auth L2], JV [auth S1], KN [auth L2], KV [auth S1], LO [auth L3], LV [auth S1], MQ [auth LN], MV [auth S1], NV [auth S1], OV [auth S1], PV [auth S1], QH [auth L1], QV [auth S1], RH [auth L1], RP [auth L7], RV [auth S1], SH [auth L1], SP [auth L7], SQ [auth Lf], SV [auth S1], TH [auth L1], UH [auth L1], VH [auth L1], VW [auth SS], WH [auth L1], WO [auth L4], XH [auth L1], XO [auth L4], YH [auth L1], YO [auth L4], ZH [auth L1], ZM [auth L2]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 2.25 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.20.1_4487:

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2025-07-23 
Deposition Author(s): Rajan, K.S., Yonath, A.

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Funding Organization	Location	Grant Number
European Research Council (ERC)	European Union	--

Revision History  

• Version 1.0: 2025-07-23
  Type: Initial release