9FTL | pdb_00009ftl

Asgard ESCRT-IIIB filament structure


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.91 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

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This is version 1.0 of the entry. See complete history

Literature

Asgard archaea reveal the conserved principles of ESCRT-III membrane remodeling.

Souza, D.P.Espadas, J.Chaaban, S.Moody, E.R.R.Hatano, T.Balasubramanian, M.Williams, T.A.Roux, A.Baum, B.

(2025) Sci Adv 11: eads5255-eads5255

  • DOI: https://doi.org/10.1126/sciadv.ads5255
  • Primary Citation Related Structures: 
    9FTL, 9FTM

  • PubMed Abstract: 

    ESCRT-III proteins assemble into composite polymers that undergo stepwise changes in composition and structure to deform membranes across the tree of life. Here, using a phylogenetic analysis, we demonstrate that the two endosomal sorting complex required for transport III (ESCRT-III) proteins present in eukaryote's closest Asgard archaeal relatives are evolutionarily related to the B- and A-type eukaryotic paralogs that initiate and execute membrane remodeling, respectively. We show that Asgard ESCRT-IIIB assembles into parallel arrays on planar membranes to initiate membrane deformation, from where it recruits ESCRT-IIIA to generate composite polymers. Last, we show that Asgard ESCRT-IIIA is able to remodel membranes into tubes as a likely prelude to scission. Together, these data reveal a set of conserved principles governing ESCRT-III-dependent membrane remodeling that first emerged in a two-component ESCRT-III system in archaea.


  • Organizational Affiliation
    • MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, UK.

Macromolecule Content 

  • Total Structure Weight: 48.26 kDa 
  • Atom Count: 2,404 
  • Modeled Residue Count: 335 
  • Deposited Residue Count: 436 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Heimdallarchaeota archaeon AB_125 ESCRT-IIIBA,
B [auth a]
218Candidatus Heimdallarchaeota archaeonMutation(s): 0 
Gene Names: HeimAB125_14020

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.91 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION5
MODEL REFINEMENTPHENIX1.20

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Wellcome TrustUnited Kingdom203276/Z/16/Z
Wellcome TrustUnited Kingdom210711/Z/18/Z

Revision History  (Full details and data files)

  • Version 1.0: 2025-04-16
    Type: Initial release