9FTE | pdb_00009fte

Cryo-EM structure of the adhesion GPCR ADGRV1 in complex with a nanobody

PDB DOI: https://doi.org/10.2210/pdb9FTE/pdb
EM Map EMD-50743: EMDB EMDataResource

Classification: MEMBRANE PROTEIN
Organism(s): Mus musculus, Vicugna pacos
Expression System: Spodoptera frugiperda, Escherichia coli
Mutation(s): No

Deposited: 2024-06-24 Released: 2026-01-14
Deposition Author(s): Achat, Y., Prevost, M., Mechaly, A., Genera, M., Colcombet, J.B., Bezault, A., Winter, J.M., Ayme, G., Venien-Bryan, C., Wolff, N.
Funding Organization(s): Other government

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.82 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

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This is version 1.0 of the entry. See complete history.

Literature

Cryo-EM structure of the adhesion GPCR ADGRV1 in complex with a nanobody

Achat, Y., Prevost, M., Mechaly, A., Genera, M., Colcombet, J.B., Bezault, A., Winter, J.M., Ayme, G., Venien-Bryan, C., Wolff, N.

To be published.

Macromolecule Content

Total Structure Weight: 63.1 kDa
Atom Count: 2,786
Modeled Residue Count: 362
Deposited Residue Count: 573
Unique protein chains: 2

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Adhesion G protein-coupled receptor V1	A	426	Mus musculus	Mutation(s): 0 Gene Names: Adgrv1, Gpr98
UniProt & NIH Common Fund Data Resources
Find proteins for B8JJE0 (Mus musculus) Explore B8JJE0 Go to UniProtKB: B8JJE0
IMPC: MGI:1274784
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	B8JJE0
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Nanobody RE02	B	147	Vicugna pacos	Mutation(s): 0

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.82 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2026-01-14

Deposition Author(s):

Colcombet, J.B.

Venien-Bryan, C.

Funding Organization	Location	Grant Number
Other government	France	2019-0018C1 Fondation pour l'Audition
Other government	France	4133/2021 Ministere de l'enseignement superieur et de la recherche

Revision History (Full details and data files)

Version 1.0: 2026-01-14
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.