9FQ3 | pdb_00009fq3

HEV ORF2 protein in complex with Fabs Es1.114 and Es5.127

PDB DOI: https://doi.org/10.2210/pdb9FQ3/pdb
EM Map EMD-50643: EMDB EMDataResource

Classification: VIRAL PROTEIN
Organism(s): Hepatitis E virus, Homo sapiens
Expression System: Homo sapiens
Mutation(s): No

Deposited: 2024-06-14 Released: 2025-05-14
Deposition Author(s): Baquero, E., Molinos, L., Mouquet, H.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.80 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 9FQ3

This is version 1.0 of the entry. See complete history.

Literature

HEV ORF2 protein in complex with Fabs Es1.114 and Es5.127

Molinos, L., Baquero, E., Mouquet, H.

To be published.

Macromolecule Content

Total Structure Weight: 298.5 kDa
Atom Count: 8,742
Modeled Residue Count: 1,168
Deposited Residue Count: 2,770
Unique protein chains: 5

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Secreted protein ORF2	A, B	486	Hepatitis E virus	Mutation(s): 0 Gene Names: ORF2
UniProt
Find proteins for Q9YLQ9 (Hepatitis E virus genotype 3 (isolate Human/United States/US2)) Explore Q9YLQ9 Go to UniProtKB: Q9YLQ9
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9YLQ9
Sequence Annotations Expand
Reference Sequence

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Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
human IgG antibody Es5.127 - Fab heavy chain	C, E	240	Homo sapiens	Mutation(s): 0

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Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Human IgG antibody Es5.127 - Fab light chain	D, F	216	Homo sapiens	Mutation(s): 0

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Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
Human IgG antibody Es1.114 - Fab heavy chain	G, I	237	Homo sapiens	Mutation(s): 0

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Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
Himan IgG antibody Es1.114 - Fab light chain	H, J	206	Homo sapiens	Mutation(s): 0

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.80 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.21.1_5286

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2025-05-14

Deposition Author(s):

Funding Organization	Location	Grant Number
Not funded		--

Revision History (Full details and data files)

Version 1.0: 2025-05-14
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.