9FJC

Compact CVB1-VLP (Tween80)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.15 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Comparison of structure and immunogenicity of CVB1-VLP and inactivated CVB1 vaccine candidates.

Soppela, S.Plavec, Z.Grohn, S.Jartti, M.Oikarinen, S.Laajala, M.Marjomaki, V.Butcher, S.J.Hankaniemi, M.M.

(2024) Res Sq 

  • DOI: https://doi.org/10.21203/rs.3.rs-4545395/v1
  • Primary Citation of Related Structures:  
    9FJC, 9FJD, 9FJE

  • PubMed Abstract: 

    Coxsackievirus B1 (CVB1) is a common cause of acute and chronic myocarditis, dilated cardiomyopathy and aseptic meningitis. However, no CVB-vaccines are available for human use. In this study, we investigated the immunogenicity of virus-like particle (VLP) and inactivated whole-virus vaccines for CVB1 when administrated to mice via either subcutaneous or intranasal routes formulated with and without commercial and experimental adjuvants. Here, the potential of utilizing epigallocatechin-3-gallate (EGCG) as a mucosal adjuvant synergistically with its ability to inactivate the virus were investigated. EGCG had promising adjuvant properties for CVB1-VLP when administered via the parenteral route but limited efficacy via intranasal administration. However, intranasal administration of the formalin-inactivated virus induced high CVB1-specific humoral, cellular, and mucosal immune responses. Also, based on CVB1-specific IgG-antibody responses, we conclude that CVB1-VLP can be taken up by immune cells when administrated intranasally and further structural engineering for the VLP may increase the mucosal immunogenicity. The preparations contained mixtures of compact and expanded A particles with 85% expanded in the formalin-inactivated virus, but only 52% in the VLP observed by cryogenic electron microscopy. To correlate the structure to immunogenicity, we solved the structures of the CVB1-VLP and the formalin-inactivated CVB1 virus at resolutions ranging from 2.15 A to 4.1 A for the expanded and compact VLP and virus particles by image reconstruction. These structures can be used in designing mutations increasing the stability and immunogenicity of CVB1-VLP in the future. Overall, our results highlight the potential of using formalin inactivated CVB1 vaccine in mucosal immunization programs and provide important information for future development of VLP-based vaccines against all enteroviruses.


  • Organizational Affiliation

    Tampere University.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Capsid protein VP1A [auth 1]223Coxsackievirus B1Mutation(s): 18 
UniProt
Find proteins for P08291 (Coxsackievirus B1 (strain Japan))
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Go to UniProtKB:  P08291
Entity Groups  
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UniProt GroupP08291
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Capsid protein VP2B [auth 2]251Coxsackievirus B1Mutation(s): 10 
UniProt
Find proteins for P08291 (Coxsackievirus B1 (strain Japan))
Explore P08291 
Go to UniProtKB:  P08291
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UniProt GroupP08291
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Capsid protein VP3C [auth 3]238Coxsackievirus B1Mutation(s): 10 
UniProt
Find proteins for P08291 (Coxsackievirus B1 (strain Japan))
Explore P08291 
Go to UniProtKB:  P08291
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UniProt GroupP08291
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  • Reference Sequence

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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Capsid protein VP4D [auth 4]17Coxsackievirus B1Mutation(s): 0 
UniProt
Find proteins for P08291 (Coxsackievirus B1 (strain Japan))
Explore P08291 
Go to UniProtKB:  P08291
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP08291
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
PLM (Subject of Investigation/LOI)
Query on PLM

Download Ideal Coordinates CCD File 
E [auth 1]PALMITIC ACID
C16 H32 O2
IPCSVZSSVZVIGE-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.15 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Sigrid Juselius FoundationFinland95-7202-38
Sigrid Juselius FoundationFinland121-8570-56
Jane and Aatos Erkko FoundationFinland210034
Jane and Aatos Erkko FoundationFinland240002

Revision History  (Full details and data files)

  • Version 1.0: 2024-07-31
    Type: Initial release