9FHP

CryoEM structure of wild-type Turnip Yellows Virus

PDB DOI: https://doi.org/10.2210/pdb9FHP/pdb
EM Map EMD-10003: EMDB EMDataResource

Classification: VIRUS
Organism(s): Turnip yellows virus
Expression System: Nicotiana benthamiana
Mutation(s): No

Deposited: 2024-05-28 Released: 2024-06-05
Deposition Author(s): Trapani, S., Lai Kee Him, J., Hoh, F., Brault, V., Bron, P.
Funding Organization(s): French Infrastructure for Integrated Structural Biology (FRISBI)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.08 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

CryoEM structure of wild-type Turnip Yellows Virus

Lai Kee Him, J., Trapani, S., Boissinot, S., Reinold, C., Fallet, C., Ancelin, A., Lecorre, F., Hoh, F., Ziegler-Graff, V., Brault, V., Bron, P.

To be published.

Macromolecule Content

Total Structure Weight: 67.57 kDa
Atom Count: 3,208
Modelled Residue Count: 419
Deposited Residue Count: 606
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Minor capsid readthrough protein	A, B, C	202	Turnip yellows virus	Mutation(s): 0 Gene Names: ORF3/ORF5
UniProt
Find proteins for P09514 (Turnip yellows virus (isolate FL-1)) Explore P09514 Go to UniProtKB: P09514
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P09514
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 4.08 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
RECONSTRUCTION	RELION	3.1
MODEL REFINEMENT	Coot	0.9.8.93

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-06-05

Deposition Author(s):

Lai Kee Him, J.

Funding Organization	Location	Grant Number
French Infrastructure for Integrated Structural Biology (FRISBI)	France	ANR-10-INSB-05

Revision History (Full details and data files)

Version 1.0: 2024-06-05
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.