9FHN | pdb_00009fhn

Crystal structure of the arginine kinase Der p 20.0101

PDB DOI: https://doi.org/10.2210/pdb9FHN/pdb

Classification: ALLERGEN
Organism(s): Dermatophagoides pteronyssinus
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2024-05-28 Released: 2025-06-11
Deposition Author(s): Schooltink, L., Sagmeister, T., Todorovic, N., Hofer, G., Keller, W.
Funding Organization(s): Austrian Science Fund

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free:
0.310 (Depositor), 0.310 (DCC)
R-Value Work:
0.270 (Depositor), 0.270 (DCC)

Starting Model: in silico
View more details

wwPDB Validation 3D Report Full Report

Validation slider image for 9FHN

This is version 1.0 of the entry. See complete history.

Literature

Crystal structure of the arginine kinase To be published.

Schooltink, L., Todorovic, N., Sagmeister, T., Hofer, G., Keller, W.

To be published.

Macromolecule Content

Total Structure Weight: 81.07 kDa
Atom Count: 5,785
Modeled Residue Count: 696
Deposited Residue Count: 712
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
arginine kinase	A, B	356	Dermatophagoides pteronyssinus	Mutation(s): 0 EC: 2.7.3.3
UniProt
Find proteins for B2ZSY4 (Dermatophagoides pteronyssinus) Explore B2ZSY4 Go to UniProtKB: B2ZSY4
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	B2ZSY4
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free: 0.310 (Depositor), 0.310 (DCC)
R-Value Work: 0.270 (Depositor), 0.270 (DCC)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 48.28	α = 90
b = 99.02	β = 108.056
c = 77.883	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
DIALS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2025-06-11

Deposition Author(s):

Funding Organization	Location	Grant Number
Austrian Science Fund	Austria	F4604
Austrian Science Fund	Austria	Doc130

Revision History (Full details and data files)

Version 1.0: 2025-06-11
Type: Initial release

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.