Structure of Pol II-TC-NER-STK19 complex
Lee, S.-H., Sixma, T.K.(2024) Mol Cell 
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase subunit | 1,970 | Sus scrofa domesticus | Mutation(s): 0  EC: 2.7.7.6 | ||
UniProt | |||||
Find proteins for A0A8D1DPV6 (Sus scrofa) Explore A0A8D1DPV6  Go to UniProtKB:  A0A8D1DPV6 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A8D1DPV6 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase subunit beta | 1,300 | Sus scrofa domesticus | Mutation(s): 0  EC: 2.7.7.6 | ||
UniProt | |||||
Find proteins for I3LGP4 (Sus scrofa) Explore I3LGP4  Go to UniProtKB:  I3LGP4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | I3LGP4 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase II subunit RPB3 | 275 | Sus scrofa domesticus | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for I3LCH3 (Sus scrofa) Explore I3LCH3  Go to UniProtKB:  I3LCH3 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | I3LCH3 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
RNA polymerase II subunit D | 142 | Sus scrofa domesticus | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for A0A4X1VM56 (Sus scrofa) Explore A0A4X1VM56  Go to UniProtKB:  A0A4X1VM56 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A4X1VM56 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 5 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase II subunit E | 210 | Sus scrofa domesticus | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for I3LSI7 (Sus scrofa) Explore I3LSI7  Go to UniProtKB:  I3LSI7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | I3LSI7 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 6 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerases I, II, and III subunit RPABC2 | 127 | Sus scrofa domesticus | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for A0A4X1VEK9 (Sus scrofa) Explore A0A4X1VEK9  Go to UniProtKB:  A0A4X1VEK9 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A4X1VEK9 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 7 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase subunit | 172 | Sus scrofa domesticus | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for A0A4X1VKG7 (Sus scrofa) Explore A0A4X1VKG7  Go to UniProtKB:  A0A4X1VKG7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A4X1VKG7 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 8 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerases I, II, and III subunit RPABC3 | 150 | Sus scrofa domesticus | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for I3LCB2 (Sus scrofa) Explore I3LCB2  Go to UniProtKB:  I3LCB2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | I3LCB2 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 9 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase II subunit RPB9 | 125 | Sus scrofa domesticus | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for P60899 (Sus scrofa) Explore P60899  Go to UniProtKB:  P60899 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P60899 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 10 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerases I, II, and III subunit RPABC5 | 67 | Sus scrofa domesticus | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for A0A4X1VYD0 (Sus scrofa) Explore A0A4X1VYD0  Go to UniProtKB:  A0A4X1VYD0 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A4X1VYD0 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 11 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase II subunit RPB11-a | 117 | Sus scrofa domesticus | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for F1RKE4 (Sus scrofa) Explore F1RKE4  Go to UniProtKB:  F1RKE4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | F1RKE4 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 12 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
RNA polymerase II, I and III subunit K | 58 | Sus scrofa domesticus | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for A0A4X1TRS6 (Sus scrofa) Explore A0A4X1TRS6  Go to UniProtKB:  A0A4X1TRS6 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A4X1TRS6 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 13 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Transcription elongation factor 1 homolog | M [auth f] | 85 | Homo sapiens | Mutation(s): 0  Gene Names: ELOF1 | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P60002 (Homo sapiens) Explore P60002  Go to UniProtKB:  P60002 | |||||
PHAROS:  P60002 GTEx:  ENSG00000130165  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P60002 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 17 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA excision repair protein ERCC-8 | Q [auth a] | 408 | Homo sapiens | Mutation(s): 0  Gene Names: ERCC8, CKN1, CSA | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q13216 (Homo sapiens) Explore Q13216  Go to UniProtKB:  Q13216 | |||||
PHAROS:  Q13216 GTEx:  ENSG00000049167  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q13216 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 18 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA damage-binding protein 1 | R [auth b] | 1,160 | Homo sapiens | Mutation(s): 0  Gene Names: DDB1, XAP1 | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q16531 (Homo sapiens) Explore Q16531  Go to UniProtKB:  Q16531 | |||||
PHAROS:  Q16531 GTEx:  ENSG00000167986  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q16531 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 19 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DET1- and DDB1-associated protein 1 | S [auth c] | 152 | Homo sapiens | Mutation(s): 0  Gene Names: DDA1, C19orf58, PCIA1 | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9BW61 (Homo sapiens) Explore Q9BW61  Go to UniProtKB:  Q9BW61 | |||||
PHAROS:  Q9BW61 GTEx:  ENSG00000130311  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9BW61 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 20 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Inactive serine/threonine-protein kinase 19 | T [auth g] | 257 | Homo sapiens | Mutation(s): 0  Gene Names: STK19, G11, RP1 | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P49842 (Homo sapiens) Explore P49842  Go to UniProtKB:  P49842 | |||||
PHAROS:  P49842 GTEx:  ENSG00000204344  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P49842 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 21 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA excision repair protein ERCC-6 | U [auth e] | 1,493 | Homo sapiens | Mutation(s): 0  Gene Names: ERCC6, CSB EC: 3.6.4 | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q03468 (Homo sapiens) Explore Q03468  Go to UniProtKB:  Q03468 | |||||
PHAROS:  Q03468 GTEx:  ENSG00000225830  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q03468 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 22 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
UV-stimulated scaffold protein A | V [auth d] | 729 | Homo sapiens | Mutation(s): 0  Gene Names: UVSSA, KIAA1530 | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q2YD98 (Homo sapiens) Explore Q2YD98  Go to UniProtKB:  Q2YD98 | |||||
PHAROS:  Q2YD98 GTEx:  ENSG00000163945  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q2YD98 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 14 | |||||
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Molecule | Chains | Length | Organism | Image | |
Non-template DNA | 60 | Homo sapiens | |||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 15 | |||||
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Molecule | Chains | Length | Organism | Image | |
RNA | O [auth M] | 25 | Homo sapiens | ||
Sequence AnnotationsExpand | |||||
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Entity ID: 16 | |||||
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Molecule | Chains | Length | Organism | Image | |
Template DNA | P [auth T] | 60 | Homo sapiens | ||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ZN (Subject of Investigation/LOI) Query on ZN | AA [auth C] BA [auth I] CA [auth I] DA [auth J] EA [auth L] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
MG (Subject of Investigation/LOI) Query on MG | Y [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Task | Software Package | Version |
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RECONSTRUCTION | cryoSPARC |
Funding Organization | Location | Grant Number |
---|---|---|
Netherlands Organisation for Scientific Research (NWO) | Netherlands | TOP 714.017.003 |
Oncode Institute | Netherlands | -- |