9F9U

Crystal structure of Saccharolobus solfataricus NusA2

PDB DOI: https://doi.org/10.2210/pdb9F9U/pdb

Classification: RNA BINDING PROTEIN
Organism(s): Saccharolobus solfataricus P2
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2024-05-08 Released: 2024-10-02
Deposition Author(s): Pilottto, S., Phung, D.K., Werner, F.
Funding Organization(s): Wellcome Trust

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.68 Å
R-Value Free: 0.236
R-Value Work: 0.216
R-Value Observed: 0.217

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Archaeal NusA2 is the evolutionary precursor of the ribosomal protein eS7 in eukaryotes

Phung, D.K., Pilottto, S., Matelska, D., Blombach, F., Pinotsis, N., Hovan, L., Gervasio, F.L., Werner, F.

(2024) Structure

Macromolecule Content

Total Structure Weight: 19.63 kDa
Atom Count: 1,533
Modelled Residue Count: 170
Deposited Residue Count: 170
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Transcription elongation factor NusA	A	170	Saccharolobus solfataricus P2	Mutation(s): 0 Gene Names: SSO0172
UniProt
Find proteins for Q980V4 (Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)) Explore Q980V4 Go to UniProtKB: Q980V4
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q980V4
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ZN Query on ZN Download Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A]	B [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.68 Å
R-Value Free: 0.236
R-Value Work: 0.216
R-Value Observed: 0.217
Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 35.467	α = 90
b = 72.813	β = 111.95
c = 41.746	γ = 90

Software Package:

Software Name	Purpose
XDS	data reduction
XDS	data scaling
SHELXDE	phasing
ARP/wARP	model building
PHENIX	refinement

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-10-02

Deposition Author(s):

Funding Organization	Location	Grant Number
Wellcome Trust	United Kingdom	207446/Z/17/Z

Revision History (Full details and data files)

Version 1.0: 2024-10-02
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.