9F6Z | pdb_00009f6z

Human N-deacetylase/N-sulfotransferase 1 homodimer

• PDB DOI: https://doi.org/10.2210/pdb9F6Z/pdb
• EM Map EMD-17349: EMDB EMDataResource

• Classification: BIOSYNTHETIC PROTEIN
• Organism(s): Homo sapiens
• Expression System: Homo sapiens
• Mutation(s): No 


• Deposited: 2024-05-02 Released: 2025-04-16 
• Deposition Author(s): Wild, R., Lortat-Jacob, H., Vallet, S.D.
• Funding Organization(s): Agence Nationale de la Recherche (ANR), Centre National de la Recherche Scientifique (CNRS)

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 4.50 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Starting Model: in silico

Literature

Functional and structural insights into human N-deacetylase/N-sulfotransferase activities

Vallet, S.D., Annaval, T., Richard, E., Henault, J., Le Narvor, C., Priem, B., Bonnaffe, D., Vives, R.R., Wild, R., Lortat-Jacob, H.

(2023) Proteoglycan Research 

• DOI: https://doi.org/10.1002/pgr2.8

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by (software)

Biological Assembly Evidence: electron microscopy, gel filtration, light scattering

Macromolecule Content 

• Total Structure Weight: 196.23 kDa 
• Atom Count: 13,072 
• Modeled Residue Count: 1,609 
• Deposited Residue Count: 1,716 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1	A, B	858	Homo sapiens	Mutation(s): 0  Gene Names: NDST1, HSST, HSST1 EC: 3.5.1 (PDB Primary Data), 2.8.2.8 (PDB Primary Data)
UniProt & NIH Common Fund Data Resources
Find proteins for P52848 (Homo sapiens) Explore P52848  Go to UniProtKB:  P52848
PHAROS:  P52848 GTEx:  ENSG00000070614

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 4.50 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
RECONSTRUCTION	cryoSPARC	Non-Uniform Refinement

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2025-04-16 
Deposition Author(s): Wild, R., Lortat-Jacob, H., Vallet, S.D.

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Funding Organization	Location	Grant Number
Agence Nationale de la Recherche (ANR)	France	ANR-18-CE11-0006-01
Agence Nationale de la Recherche (ANR)	France	ANR-21-CE29-0022
Agence Nationale de la Recherche (ANR)	France	ANR-15-IDEX-02
Centre National de la Recherche Scientifique (CNRS)	France	ATIP-Avenir program

Revision History  

• Version 1.0: 2025-04-16
  Type: Initial release