9F63

Crystal structure of Saccharomyces cerevisiae pH nine-sensitive protein 1 (PNS1)

PDB DOI: https://doi.org/10.2210/pdb9F63/pdb

Classification: MEMBRANE PROTEIN
Organism(s): Saccharomyces cerevisiae
Expression System: Saccharomyces cerevisiae
Mutation(s): No
Membrane Protein: Yes PDBTM

Deposited: 2024-04-30 Released: 2024-05-15
Deposition Author(s): Driller, J.H., Pedersen, B.P.
Funding Organization(s): Lundbeckfonden, H2020 Marie Curie Actions of the European Commission

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.73 Å
R-Value Free: 0.285
R-Value Work: 0.232
R-Value Observed: 0.235

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

S. cerevisiae pH nine-sensitive protein 1 is not a choline transporter.

Driller, J.H., Pedersen, B.P.

To be published.

Macromolecule Content

Total Structure Weight: 63.46 kDa
Atom Count: 3,381
Modelled Residue Count: 422
Deposited Residue Count: 572
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein PNS1	A	572	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: PNS1, YOR161C, O3568 Membrane Entity: Yes
UniProt
Find proteins for Q12412 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q12412 Go to UniProtKB: Q12412
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q12412
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.73 Å
R-Value Free: 0.285
R-Value Work: 0.232
R-Value Observed: 0.235
Space Group: P 2 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 67.449	α = 90
b = 91.262	β = 90
c = 108.372	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
Aimless	data scaling
XDS	data reduction
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-05-15

Deposition Author(s):

Funding Organization	Location	Grant Number
Lundbeckfonden	Denmark	R380-2021-1207
H2020 Marie Curie Actions of the European Commission	European Union	890822

Revision History (Full details and data files)

Version 1.0: 2024-05-15
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.