The vaccinia minimal RNA polymerase cryo EM structure at 1.9A resolution
Grimm, C., Jungwirth, S., Fischer, U.To be published.
Experimental Data Snapshot
wwPDB Validation 3D Report Full Report
Macromolecule Content 
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| DNA-directed RNA polymerase 147 kDa polypeptide | 1,286 | Orthopoxvirus vaccinia | Mutation(s): 3  Gene Names: OPG105, RPO147, J6R EC: 2.7.7.6 | ![]() | |
UniProt | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P20504 | ||||
Sequence AnnotationsExpand | |||||
Reference Sequence | |||||
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| DNA-directed RNA polymerase 133 kDa polypeptide | 1,164 | Orthopoxvirus vaccinia | Mutation(s): 2  Gene Names: OPG151, RPO132, A24R EC: 2.7.7.6 | ![]() | |
UniProt | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P68694 | ||||
Sequence AnnotationsExpand | |||||
Reference Sequence | |||||
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| DNA-directed RNA polymerase 35 kDa subunit | 305 | Orthopoxvirus vaccinia | Mutation(s): 1  Gene Names: OPG156, RPO35, A29L EC: 2.7.7.6 | ![]() | |
UniProt | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P21087 | ||||
Sequence AnnotationsExpand | |||||
Reference Sequence | |||||
Entity ID: 4 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| DNA-directed RNA polymerase 22 kDa subunit | D [auth E] | 186 | Orthopoxvirus vaccinia | Mutation(s): 1  Gene Names: OPG103, RPO22, J4R EC: 2.7.7.6 | ![]() |
UniProt | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P68608 | ||||
Sequence AnnotationsExpand | |||||
Reference Sequence | |||||
Entity ID: 5 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| DNA-directed RNA polymerase 19 kDa subunit | E [auth F] | 164 | Orthopoxvirus vaccinia | Mutation(s): 0  Gene Names: OPG131, RPO19, A5R EC: 2.7.7.6 | ![]() |
UniProt | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P68610 | ||||
Sequence AnnotationsExpand | |||||
Reference Sequence | |||||
Entity ID: 6 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| DNA-directed RNA polymerase 18 kDa subunit | F [auth G] | 161 | Orthopoxvirus vaccinia | Mutation(s): 0  Gene Names: OPG119, RPO18, D7R EC: 2.7.7.6 | ![]() |
UniProt | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P21034 | ||||
Sequence AnnotationsExpand | |||||
Reference Sequence | |||||
Entity ID: 7 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| DNA-directed RNA polymerase 7 kDa subunit | G [auth J] | 63 | Orthopoxvirus vaccinia | Mutation(s): 0  Gene Names: OPG090, RPO7, G5.5R EC: 2.7.7.6 | ![]() |
UniProt | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P68315 | ||||
Sequence AnnotationsExpand | |||||
Reference Sequence | |||||
Entity ID: 8 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| DNA-directed RNA polymerase 30 kDa polypeptide | H [auth S] | 259 | Orthopoxvirus vaccinia | Mutation(s): 0  Gene Names: OPG066, RPO30, E4L EC: 2.7.7.6 | ![]() |
UniProt | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P21082 | ||||
Sequence AnnotationsExpand | |||||
Reference Sequence | |||||
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN Download:Ideal Coordinates CCD File | J [auth A], K [auth A], L [auth B], M [auth J] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
| MG Download:Ideal Coordinates CCD File | I [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N | |||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| SEP Query on SEP | H [auth S] | L-PEPTIDE LINKING | C3 H8 N O6 P | SER | |
| Task | Software Package | Version |
|---|---|---|
| RECONSTRUCTION | cryoSPARC | 4.1 |
| Funding Organization | Location | Grant Number |
|---|---|---|
| German Research Foundation (DFG) | Germany | -- |