9EWY | pdb_00009ewy

CryoEM structure of human MICAL1


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Models: experimental
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Literature

Structural basis of MICAL autoinhibition.

Horvath, M.Schrofel, A.Kowalska, K.Sabo, J.Vlasak, J.Nourisanami, F.Sobol, M.Pinkas, D.Knapp, K.Koupilova, N.Novacek, J.Veverka, V.Lansky, Z.Rozbesky, D.

(2024) Nat Commun 15: 9810-9810

  • DOI: https://doi.org/10.1038/s41467-024-54131-2
  • Primary Citation of Related Structures:  
    9EWY

  • PubMed Abstract: 

    MICAL proteins play a crucial role in cellular dynamics by binding and disassembling actin filaments, impacting processes like axon guidance, cytokinesis, and cell morphology. Their cellular activity is tightly controlled, as dysregulation can lead to detrimental effects on cellular morphology. Although previous studies have suggested that MICALs are autoinhibited, and require Rab proteins to become active, the detailed molecular mechanisms remained unclear. Here, we report the cryo-EM structure of human MICAL1 at a nominal resolution of 3.1 Å. Structural analyses, alongside biochemical and functional studies, show that MICAL1 autoinhibition is mediated by an intramolecular interaction between its N-terminal catalytic and C-terminal coiled-coil domains, blocking F-actin interaction. Moreover, we demonstrate that allosteric changes in the coiled-coil domain and the binding of the tripartite assembly of CH-L2α1-LIM domains to the coiled-coil domain are crucial for MICAL activation and autoinhibition. These mechanisms appear to be evolutionarily conserved, suggesting a potential universality across the MICAL family.


  • Organizational Affiliation
    • Department of Cell Biology, Faculty of Science, Charles University, Prague, Czechia.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
[F-actin]-monooxygenase MICAL11,067Homo sapiensMutation(s): 0 
Gene Names: MICAL1MICALNICAL
EC: 1.14.13.225 (PDB Primary Data), 1.6.3.1 (PDB Primary Data)
UniProt & NIH Common Fund Data Resources
Find proteins for Q8TDZ2 (Homo sapiens)
Explore Q8TDZ2 
Go to UniProtKB:  Q8TDZ2
PHAROS:  Q8TDZ2
GTEx:  ENSG00000135596 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8TDZ2
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION4.0
MODEL REFINEMENTPHENIX1.21-5207

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Czech Science FoundationCzech Republic21-27204M

Revision History  (Full details and data files)

  • Version 1.0: 2024-11-20
    Type: Initial release