9EVS | pdb_00009evs

Structure of the flowering plant mitoribosome with P-site tRNA

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.05 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history. 


Literature

Structural insights into cauliflower mitoribosome in translation state and in association with a late assembly factor.

Skaltsogiannis, V., Wolff, P., Nguyen, T.T., Corre, N., Pflieger, D., Blevins, T., Hashem, Y., Giege, P., Waltz, F.

(2025) Nat Commun 16: 10839-10839

  • DOI: https://doi.org/10.1038/s41467-025-65864-z
  • Primary Citation of Related Structures:  
    9EVS, 9GYT

  • PubMed Abstract: 

    Ribosomes are key molecular machines that translate mRNA into proteins. Mitoribosomes are specific ribosomes found in mitochondria, which have been shown to be remarkably diverse across eukaryotic lineages. In plants, they possess unique features, including additional rRNA domains stabilized by plant-specific proteins. However, the structural specificities of plant mitoribosomes in translation state remained unknown. We used cryo-electron microscopy to provide a high-resolution structural characterization of the cauliflower mitoribosome, in translating and maturation states. The structure reveals the mitoribosome bound with a tRNA in the peptidyl site, along with a segment of mRNA and a nascent polypeptide. Moreover, using structural data, nanopore sequencing and mass spectrometry, we identify a set of 19 ribosomal RNA modifications. Additionally, we observe a late assembly intermediate of the small ribosomal subunit, in complex with the RsgA assembly factor. This reveals how a plant-specific extension of RsgA blocks the mRNA channel to prevent premature mRNA association before complete small subunit maturation. Our findings elucidate key aspects of translation in angiosperm plant mitochondria, revealing its distinct features compared to other eukaryotic lineages.

    • Organizational Affiliation: 
    • Institut de biologie de moléculaire des plantes CNRS, Université de Strasbourg, 12 rue du général Zimmer, Strasbourg, France.

Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS3mA [auth B]554Brassica oleracea var. botrytisMutation(s): 0 
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UniProt GroupA0A9F2H260
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
uS4mB [auth C]362Brassica oleracea var. botrytisMutation(s): 0 
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Find proteins for A0A8E8GUN5 (Brassica oleracea var. gongylodes)
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
uS5mC [auth D]501Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
bS6mD [auth E]138Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
uS7m,Small ribosomal subunit protein uS7mE [auth F]157Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
uS8mF [auth G]129Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
uS9mG [auth H]383Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
uS10mH [auth I]228Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
uS11mI [auth J]304Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
uS12mJ [auth K]125Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
uS13mK [auth L]154Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
uS14mL [auth M]155Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
uS15mM [auth N]414Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
bS16mN [auth O]136Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
uS17mO [auth P]110Brassica oleracea var. botrytisMutation(s): 0 
UniProt
Find proteins for A0A0D3CIP0 (Brassica oleracea var. oleracea)
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
bS18mP [auth Q]237Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
uS19mQ [auth R]212Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
bS21mR [auth S]100Brassica oleracea var. botrytisMutation(s): 0 
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Find proteins for A0A0D3AW14 (Brassica oleracea var. oleracea)
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
bTHXmS [auth T]94Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
mS23T [auth U]192Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
mS26U [auth V]193Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
mS29V [auth W]483Brassica oleracea var. botrytisMutation(s): 0 
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Find proteins for A0A0D3CAV8 (Brassica oleracea var. oleracea)
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Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
mS31/mS46W [auth X]496Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
mS33X [auth Y]102Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
mS34Y [auth Z]153Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
uL2m C-terBA [auth 1B]220Brassica oleracea var. oleraceaMutation(s): 0 
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Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL2mz, N-terminal partCA [auth 1C]327Arabidopsis thalianaMutation(s): 0 
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Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
uL3mDA [auth 1D]319Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
uL4mEA [auth 1E]297Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
uL5mFA [auth 1F]185Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
uL6mGA [auth 1G]102Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
bL9mHA [auth 1H]219Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 35
MoleculeChains Sequence LengthOrganismDetailsImage
uL10mIA [auth 1I]170Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 36
MoleculeChains Sequence LengthOrganismDetailsImage
uL11mJA [auth 1J]156Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 37
MoleculeChains Sequence LengthOrganismDetailsImage
uL13mKA [auth 1K]204Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 38
MoleculeChains Sequence LengthOrganismDetailsImage
uL14mLA [auth 1L]176Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 39
MoleculeChains Sequence LengthOrganismDetailsImage
uL15mMA [auth 1M]281Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 40
MoleculeChains Sequence LengthOrganismDetailsImage
uL16mNA [auth 1N]179Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 41
MoleculeChains Sequence LengthOrganismDetailsImage
bL17mOA [auth 1O]160Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 42
MoleculeChains Sequence LengthOrganismDetailsImage
uL18mPA [auth 1P]114Brassica oleracea var. botrytisMutation(s): 0 
UniProt
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Entity ID: 43
MoleculeChains Sequence LengthOrganismDetailsImage
bL19mQA [auth 1Q]233Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 44
MoleculeChains Sequence LengthOrganismDetailsImage
bL20mRA [auth 1R]126Brassica oleracea var. botrytisMutation(s): 0 
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Find proteins for A0A3P6FUQ5 (Brassica oleracea)
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Entity ID: 45
MoleculeChains Sequence LengthOrganismDetailsImage
bL21mSA [auth 1S]270Brassica oleracea var. botrytisMutation(s): 0 
UniProt
Find proteins for A0A0D3BM42 (Brassica oleracea var. oleracea)
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Entity ID: 46
MoleculeChains Sequence LengthOrganismDetailsImage
uL22mTA [auth 1T]264Brassica oleracea var. botrytisMutation(s): 0 
UniProt
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Entity ID: 47
MoleculeChains Sequence LengthOrganismDetailsImage
uL23mUA [auth 1U]180Brassica oleracea var. botrytisMutation(s): 0 
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Find proteins for A0A3P6FL36 (Brassica oleracea)
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Entity ID: 48
MoleculeChains Sequence LengthOrganismDetailsImage
uL24mVA [auth 1V]159Brassica oleracea var. botrytisMutation(s): 0 
UniProt
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Entity ID: 49
MoleculeChains Sequence LengthOrganismDetailsImage
bL25-2mWA [auth 1W]249Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 50
MoleculeChains Sequence LengthOrganismDetailsImage
bL25mXA [auth 1X]271Brassica oleracea var. botrytisMutation(s): 0 
UniProt
Find proteins for A0A0D3BK40 (Brassica oleracea var. oleracea)
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Entity ID: 51
MoleculeChains Sequence LengthOrganismDetailsImage
bL27mYA [auth 1Y]156Brassica oleracea var. botrytisMutation(s): 0 
UniProt
Find proteins for A0A0D3B184 (Brassica oleracea var. oleracea)
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Entity ID: 52
MoleculeChains Sequence LengthOrganismDetailsImage
bL28mZA [auth 1Z]212Brassica oleracea var. botrytisMutation(s): 0 
UniProt
Find proteins for A0A0D3A2V4 (Brassica oleracea var. oleracea)
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Entity ID: 53
MoleculeChains Sequence LengthOrganismDetailsImage
uL29mAB [auth 1a]144Brassica oleracea var. botrytisMutation(s): 0 
UniProt
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Entity ID: 54
MoleculeChains Sequence LengthOrganismDetailsImage
uL30mBB [auth 1b]109Brassica oleracea var. botrytisMutation(s): 0 
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Find proteins for A0A0D3EB87 (Brassica oleracea var. oleracea)
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Entity ID: 55
MoleculeChains Sequence LengthOrganismDetailsImage
bL31mCB [auth 1c]135Brassica oleracea var. botrytisMutation(s): 0 
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Find proteins for A0A3P6EA05 (Brassica oleracea)
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Entity ID: 56
MoleculeChains Sequence LengthOrganismDetailsImage
bL32mDB [auth 1d]139Brassica oleracea var. botrytisMutation(s): 0 
UniProt
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Entity ID: 57
MoleculeChains Sequence LengthOrganismDetailsImage
bL33mEB [auth 1e]63Brassica oleracea var. botrytisMutation(s): 0 
UniProt
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Entity ID: 58
MoleculeChains Sequence LengthOrganismDetailsImage
bL34mFB [auth 1f]146Brassica oleracea var. botrytisMutation(s): 0 
UniProt
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Entity ID: 59
MoleculeChains Sequence LengthOrganismDetailsImage
bL35mGB [auth 1g]162Brassica oleracea var. botrytisMutation(s): 0 
UniProt
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Entity ID: 60
MoleculeChains Sequence LengthOrganismDetailsImage
bL36mHB [auth 1h]103Brassica oleracea var. botrytisMutation(s): 0 
UniProt
Find proteins for A0A0D3B225 (Brassica oleracea var. oleracea)
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Entity ID: 61
MoleculeChains Sequence LengthOrganismDetailsImage
mL40IB [auth 1i]247Brassica oleracea var. botrytisMutation(s): 0 
UniProt
Find proteins for A0A3P6DV95 (Brassica oleracea)
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Entity ID: 62
MoleculeChains Sequence LengthOrganismDetailsImage
mL41JB [auth 1j]90Brassica oleracea var. botrytisMutation(s): 0 
UniProt
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Entity ID: 63
MoleculeChains Sequence LengthOrganismDetailsImage
mL43KB [auth 1k]119Brassica oleracea var. botrytisMutation(s): 0 
UniProt
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Entity ID: 64
MoleculeChains Sequence LengthOrganismDetailsImage
mL46LB [auth 1l]233Brassica oleracea var. botrytisMutation(s): 0 
UniProt
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Entity ID: 65
MoleculeChains Sequence LengthOrganismDetailsImage
mL53MB [auth 1m]128Brassica oleracea var. botrytisMutation(s): 0 
UniProt
Find proteins for A0A0D2ZPT5 (Brassica oleracea var. oleracea)
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Entity ID: 66
MoleculeChains Sequence LengthOrganismDetailsImage
mL54NB [auth 1o]125Brassica oleracea var. botrytisMutation(s): 0 
UniProt
Find proteins for A0A0D3B980 (Brassica oleracea var. oleracea)
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Entity ID: 67
MoleculeChains Sequence LengthOrganismDetailsImage
mL59/mL64OB [auth 1p]130Brassica oleracea var. botrytisMutation(s): 0 
UniProt
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Entity ID: 68
MoleculeChains Sequence LengthOrganismDetailsImage
mL60PB [auth 1q]79Brassica oleracea var. botrytisMutation(s): 0 
UniProt
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Entity ID: 69
MoleculeChains Sequence LengthOrganismDetailsImage
mL80QB [auth 1r]167Brassica oleracea var. botrytisMutation(s): 0 
UniProt
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Entity ID: 70
MoleculeChains Sequence LengthOrganismDetailsImage
mL87RB [auth 1s]181Brassica oleracea var. botrytisMutation(s): 0 
UniProt
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Entity ID: 71
MoleculeChains Sequence LengthOrganismDetailsImage
mL101 (rPPR4)SB [auth 1t]491Brassica oleracea var. botrytisMutation(s): 0 
UniProt
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Entity ID: 72
MoleculeChains Sequence LengthOrganismDetailsImage
mL102 (rPPR5)TB [auth 1u]757Brassica oleracea var. botrytisMutation(s): 0 
UniProt
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Entity ID: 73
MoleculeChains Sequence LengthOrganismDetailsImage
mL104 (rPPR9)UB [auth 1v]521Brassica oleracea var. botrytisMutation(s): 0 
UniProt
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Entity ID: 74
MoleculeChains Sequence LengthOrganismDetailsImage
Nascent peptideVB [auth 1x]4Brassica oleracea var. botrytisMutation(s): 0 
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Entity ID: 78
MoleculeChains Sequence LengthOrganismDetailsImage
mS35ZB [auth a]424Brassica oleracea var. botrytisMutation(s): 0 
UniProt
Find proteins for A0A0D3CJ03 (Brassica oleracea var. oleracea)
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Entity ID: 79
MoleculeChains Sequence LengthOrganismDetailsImage
mS37AC [auth b]80Brassica oleracea var. botrytisMutation(s): 0 
UniProt
Find proteins for Q1G3Z3 (Arabidopsis thaliana)
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Entity ID: 80
MoleculeChains Sequence LengthOrganismDetailsImage
mS38BC [auth c]128Brassica oleracea var. botrytisMutation(s): 0 
UniProt
Find proteins for A0A0D3DRC3 (Brassica oleracea var. oleracea)
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Entity ID: 81
MoleculeChains Sequence LengthOrganismDetailsImage
mS41CC [auth d]110Brassica oleracea var. botrytisMutation(s): 0 
UniProt
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Entity ID: 82
MoleculeChains Sequence LengthOrganismDetailsImage
mS45DC [auth e]383Brassica oleracea var. botrytisMutation(s): 0 
UniProt
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Entity ID: 83
MoleculeChains Sequence LengthOrganismDetailsImage
mS47EC [auth f]410Brassica oleracea var. botrytisMutation(s): 0 
EC: 3.1.2 (PDB Primary Data), 3.1.2.4 (UniProt)
UniProt
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Entity ID: 84
MoleculeChains Sequence LengthOrganismDetailsImage
mS83 (rPPR10)FC [auth h]384Brassica oleracea var. botrytisMutation(s): 0 
UniProt
Find proteins for A0A0D3CHJ4 (Brassica oleracea var. oleracea)
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Entity ID: 85
MoleculeChains Sequence LengthOrganismDetailsImage
mS77 (NFD5)GC [auth i]725Brassica oleracea var. botrytisMutation(s): 0 
UniProt
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Entity ID: 86
MoleculeChains Sequence LengthOrganismDetailsImage
mS76 (rPPR1)HC [auth j]408Brassica oleracea var. botrytisMutation(s): 0 
UniProt
Find proteins for A0A0D3AAV3 (Brassica oleracea var. oleracea)
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Entity ID: 87
MoleculeChains Sequence LengthOrganismDetailsImage
mS86IC [auth k]155Brassica oleracea var. botrytisMutation(s): 0 
UniProt
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Entity ID: 88
MoleculeChains Sequence LengthOrganismDetailsImage
uS2mJC [auth A]212Brassica oleracea var. botrytisMutation(s): 0 
UniProt
Find proteins for A0A0D3CN01 (Brassica oleracea var. oleracea)
Explore A0A0D3CN01 
Go to UniProtKB:  A0A0D3CN01
Entity Groups  
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UniProt GroupA0A0D3CN01
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Entity ID: 26
MoleculeChains LengthOrganismImage
26S rRNAZ [auth 1]2,922Brassica oleracea var. botrytis
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Entity ID: 27
MoleculeChains LengthOrganismImage
5S rRNAAA [auth 3]118Brassica oleracea var. botrytis
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Entity ID: 75
MoleculeChains LengthOrganismImage
tRNAWB [auth 5]76Brassica oleracea var. botrytis
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Entity ID: 76
MoleculeChains LengthOrganismImage
18S rRNAXB [auth 2]1,591Brassica oleracea var. botrytis
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Entity ID: 77
MoleculeChains LengthOrganismImage
mRNAYB [auth 6]6Brassica oleracea var. botrytis
Sequence Annotations
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Small Molecules
Ligands 5 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ATP
Query on ATP
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LC [auth W]ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
CLM
Query on CLM
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NC [auth 1]CHLORAMPHENICOL
C11 H12 Cl2 N2 O5
WIIZWVCIJKGZOK-RKDXNWHRSA-N
ZN
Query on ZN
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PO [auth 1d],
QO [auth 1h]		ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
K
Query on K
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AE [auth 1]
AG [auth 1]
BG [auth 1]
BT [auth 2]
CE [auth 1]
AE [auth 1],
AG [auth 1],
BG [auth 1],
BT [auth 2],
CE [auth 1],
CG [auth 1],
CI [auth 1],
DF [auth 1],
DG [auth 1],
DI [auth 1],
EG [auth 1],
FG [auth 1],
GE [auth 1],
GG [auth 1],
GJ [auth 1],
IG [auth 1],
IH [auth 1],
IK [auth 1],
IS [auth 2],
JF [auth 1],
JG [auth 1],
JS [auth 2],
KF [auth 1],
KO [auth 1B],
KS [auth 2],
LF [auth 1],
LH [auth 1],
LK [auth 1],
LO [auth 1B],
LS [auth 2],
MF [auth 1],
MH [auth 1],
MK [auth 1],
MO [auth 1B],
MS [auth 2],
NF [auth 1],
NG [auth 1],
NJ [auth 1],
NK [auth 1],
NS [auth 2],
OD [auth 1],
OE [auth 1],
OF [auth 1],
OG [auth 1],
OJ [auth 1],
OO [auth 1E],
OS [auth 2],
PD [auth 1],
PG [auth 1],
PJ [auth 1],
QD [auth 1],
QG [auth 1],
QJ [auth 1],
QQ [auth 2],
RD [auth 1],
RG [auth 1],
RQ [auth 2],
SG [auth 1],
SI [auth 1],
TE [auth 1],
TQ [auth 2],
UF [auth 1],
UK [auth 1],
UQ [auth 2],
VD [auth 1],
VQ [auth 2],
WD [auth 1],
XD [auth 1],
XQ [auth 2],
YD [auth 1],
YI [auth 1],
YJ [auth 1],
ZF [auth 1],
ZK [auth 1]
POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
MG
Query on MG
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AD [auth 1]
AF [auth 1]
AH [auth 1]
AI [auth 1]
AJ [auth 1]
AD [auth 1],
AF [auth 1],
AH [auth 1],
AI [auth 1],
AJ [auth 1],
AK [auth 1],
AL [auth 1],
AM [auth 1],
AN [auth 1],
AO [auth 1],
AP [auth 2],
AQ [auth 2],
AR [auth 2],
AS [auth 2],
AT [auth 2],
BD [auth 1],
BE [auth 1],
BF [auth 1],
BH [auth 1],
BI [auth 1],
BJ [auth 1],
BK [auth 1],
BL [auth 1],
BM [auth 1],
BN [auth 1],
BO [auth 1],
BP [auth 2],
BQ [auth 2],
BR [auth 2],
BS [auth 2],
CD [auth 1],
CF [auth 1],
CH [auth 1],
CJ [auth 1],
CK [auth 1],
CL [auth 1],
CM [auth 1],
CN [auth 1],
CO [auth 1],
CP [auth 2],
CQ [auth 2],
CR [auth 2],
CS [auth 2],
CT [auth 2],
DD [auth 1],
DE [auth 1],
DH [auth 1],
DJ [auth 1],
DK [auth 1],
DL [auth 1],
DM [auth 1],
DN [auth 1],
DO [auth 1],
DP [auth 2],
DQ [auth 2],
DR [auth 2],
DS [auth 2],
ED [auth 1],
EE [auth 1],
EF [auth 1],
EH [auth 1],
EI [auth 1],
EJ [auth 1],
EK [auth 1],
EL [auth 1],
EM [auth 1],
EN [auth 1],
EO [auth 1],
EP [auth 2],
EQ [auth 2],
ER [auth 2],
ES [auth 2],
FD [auth 1],
FE [auth 1],
FF [auth 1],
FH [auth 1],
FI [auth 1],
FJ [auth 1],
FK [auth 1],
FL [auth 1],
FM [auth 1],
FN [auth 1],
FO [auth 1],
FP [auth 2],
FQ [auth 2],
FR [auth 2],
FS [auth 2],
GD [auth 1],
GF [auth 1],
GH [auth 1],
GI [auth 1],
GK [auth 1],
GL [auth 1],
GM [auth 1],
GN [auth 1],
GO [auth 1],
GP [auth 2],
GQ [auth 2],
GR [auth 2],
GS [auth 2],
HD [auth 1],
HE [auth 1],
HF [auth 1],
HG [auth 1],
HH [auth 1],
HI [auth 1],
HJ [auth 1],
HK [auth 1],
HL [auth 1],
HM [auth 1],
HN [auth 1],
HO [auth 3],
HP [auth 2],
HQ [auth 2],
HR [auth 2],
HS [auth 2],
ID [auth 1],
IE [auth 1],
IF [auth 1],
II [auth 1],
IJ [auth 1],
IL [auth 1],
IM [auth 1],
IN [auth 1],
IO [auth 3],
IP [auth 2],
IQ [auth 2],
IR [auth 2],
JD [auth 1],
JE [auth 1],
JH [auth 1],
JI [auth 1],
JJ [auth 1],
JK [auth 1],
JL [auth 1],
JM [auth 1],
JN [auth 1],
JO [auth 3],
JP [auth 2],
JQ [auth 2],
JR [auth 2],
KC [auth T],
KD [auth 1],
KE [auth 1],
KG [auth 1],
KH [auth 1],
KI [auth 1],
KJ [auth 1],
KK [auth 1],
KL [auth 1],
KM [auth 1],
KN [auth 1],
KP [auth 2],
KQ [auth 2],
KR [auth 2],
LD [auth 1],
LE [auth 1],
LG [auth 1],
LI [auth 1],
LJ [auth 1],
LL [auth 1],
LM [auth 1],
LN [auth 1],
LP [auth 2],
LQ [auth 2],
LR [auth 2],
MC [auth W],
MD [auth 1],
ME [auth 1],
MG [auth 1],
MI [auth 1],
MJ [auth 1],
ML [auth 1],
MM [auth 1],
MN [auth 1],
MP [auth 2],
MQ [auth 2],
MR [auth 2],
ND [auth 1],
NE [auth 1],
NH [auth 1],
NI [auth 1],
NL [auth 1],
NM [auth 1],
NN [auth 1],
NO [auth 1D],
NP [auth 2],
NQ [auth 2],
NR [auth 2],
OC [auth 1],
OH [auth 1],
OI [auth 1],
OK [auth 1],
OL [auth 1],
OM [auth 1],
ON [auth 1],
OP [auth 2],
OQ [auth 2],
OR [auth 2],
PC [auth 1],
PE [auth 1],
PF [auth 1],
PH [auth 1],
PI [auth 1],
PK [auth 1],
PL [auth 1],
PM [auth 1],
PN [auth 1],
PP [auth 2],
PQ [auth 2],
PR [auth 2],
PS [auth 2],
QC [auth 1],
QE [auth 1],
QF [auth 1],
QH [auth 1],
QI [auth 1],
QK [auth 1],
QL [auth 1],
QM [auth 1],
QN [auth 1],
QP [auth 2],
QR [auth 2],
QS [auth 2],
RC [auth 1],
RE [auth 1],
RF [auth 1],
RH [auth 1],
RI [auth 1],
RJ [auth 1],
RK [auth 1],
RL [auth 1],
RM [auth 1],
RN [auth 1],
RO [auth 1h],
RP [auth 2],
RR [auth 2],
RS [auth 2],
SC [auth 1],
SD [auth 1],
SE [auth 1],
SF [auth 1],
SH [auth 1],
SJ [auth 1],
SK [auth 1],
SL [auth 1],
SM [auth 1],
SN [auth 1],
SO [auth 1j],
SP [auth 2],
SQ [auth 2],
SR [auth 2],
SS [auth 2],
TC [auth 1],
TD [auth 1],
TF [auth 1],
TG [auth 1],
TH [auth 1],
TI [auth 1],
TJ [auth 1],
TK [auth 1],
TL [auth 1],
TM [auth 1],
TN [auth 1],
TO [auth 1q],
TP [auth 2],
TR [auth 2],
TS [auth 2],
UC [auth 1],
UD [auth 1],
UE [auth 1],
UG [auth 1],
UH [auth 1],
UI [auth 1],
UJ [auth 1],
UL [auth 1],
UM [auth 1],
UN [auth 1],
UO [auth 1q],
UP [auth 2],
UR [auth 2],
US [auth 2],
VC [auth 1],
VE [auth 1],
VF [auth 1],
VG [auth 1],
VH [auth 1],
VI [auth 1],
VJ [auth 1],
VK [auth 1],
VL [auth 1],
VM [auth 1],
VN [auth 1],
VO [auth 2],
VP [auth 2],
VR [auth 2],
VS [auth 2],
WC [auth 1],
WE [auth 1],
WF [auth 1],
WG [auth 1],
WH [auth 1],
WI [auth 1],
WJ [auth 1],
WK [auth 1],
WL [auth 1],
WM [auth 1],
WN [auth 1],
WO [auth 2],
WP [auth 2],
WQ [auth 2],
WR [auth 2],
WS [auth 2],
XC [auth 1],
XE [auth 1],
XF [auth 1],
XG [auth 1],
XH [auth 1],
XI [auth 1],
XJ [auth 1],
XK [auth 1],
XL [auth 1],
XM [auth 1],
XN [auth 1],
XO [auth 2],
XP [auth 2],
XR [auth 2],
XS [auth 2],
YC [auth 1],
YE [auth 1],
YF [auth 1],
YG [auth 1],
YH [auth 1],
YK [auth 1],
YL [auth 1],
YM [auth 1],
YN [auth 1],
YO [auth 2],
YP [auth 2],
YQ [auth 2],
YR [auth 2],
YS [auth 2],
ZC [auth 1],
ZD [auth 1],
ZE [auth 1],
ZG [auth 1],
ZH [auth 1],
ZI [auth 1],
ZJ [auth 1],
ZL [auth 1],
ZM [auth 1],
ZN [auth 1],
ZO [auth 2],
ZP [auth 2],
ZQ [auth 2],
ZR [auth 2],
ZS [auth 2]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.05 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.20.1_4487:
RECONSTRUCTIONcryoSPARC

Structure Validation

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Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
Alexander von Humboldt FoundationGermany--
Swiss National Science FoundationSwitzerland210561

Revision History  (Full details and data files)

  • Version 1.0: 2025-09-03
    Type: Initial release
  • Version 1.1: 2025-12-17
    Changes: Data collection, Database references