9EUH | pdb_00009euh

Cryo-EM structure of Staphylococcus aureus bacteriophage phi812 baseplate in the pre-contraction state - core, and wedge module proteins

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 9EUH

This is version 1.0 of the entry. See complete history. 

Literature

Cell attachment and tail contraction of S. aureus phage phi812

Binovsky, J., Siborova, M., Baska, R., Pichel-Beleiro, A., Skubnik, K., Novacek, J., van Raaij, M.J., Plevka, P.

To be published.

Macromolecule Content 

  • Total Structure Weight: 763.97 kDa 
  • Atom Count: 30,897 
  • Modeled Residue Count: 3,856 
  • Deposited Residue Count: 6,723 
  • Unique protein chains: 8

Macromolecules

Find similar proteins by:
|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Peptidase C51 domain-containing proteinA [auth E]808Staphylococcus phage 812Mutation(s): 0 
UniProt
Find proteins for A0A0U1X189 (Staphylococcus phage 812)
Explore A0A0U1X189 
Go to UniProtKB:  A0A0U1X189
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A0U1X189
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:
|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
TmpFB [auth J],
N [auth H]		1,019Staphylococcus phage 812Mutation(s): 0 
UniProt
Find proteins for A0A0U1WGD3 (Staphylococcus phage 812)
Explore A0A0U1WGD3 
Go to UniProtKB:  A0A0U1WGD3
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A0U1WGD3
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:
|  3D Structure
Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
Baseplate wedge subunitC [auth O],
K [auth L]		234Staphylococcus phage 812Mutation(s): 0 
UniProt
Find proteins for A0A0U1UXD7 (Staphylococcus phage 812)
Explore A0A0U1UXD7 
Go to UniProtKB:  A0A0U1UXD7
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A0U1UXD7
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:
|  3D Structure
Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
Baseplate componentD [auth G],
G [auth F]		174Staphylococcus phage 812Mutation(s): 0 
UniProt
Find proteins for A0A0U1UXD6 (Staphylococcus phage 812)
Explore A0A0U1UXD6 
Go to UniProtKB:  A0A0U1UXD6
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A0U1UXD6
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:
|  3D Structure
Entity ID: 5
MoleculeChains  Sequence LengthOrganismDetailsImage
Putative baseplate componentE [auth M],
F [auth N]		263Staphylococcus phage 812Mutation(s): 0 
UniProt
Find proteins for A0A0U1X2L4 (Staphylococcus phage 812)
Explore A0A0U1X2L4 
Go to UniProtKB:  A0A0U1X2L4
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A0U1X2L4
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:
|  3D Structure
Entity ID: 6
MoleculeChains  Sequence LengthOrganismDetailsImage
Baseplate componentH [auth D],
I,
J [auth C],
M [auth K]		348Staphylococcus phage 812Mutation(s): 0 
UniProt
Find proteins for A0A0U1WF63 (Staphylococcus phage 812)
Explore A0A0U1WF63 
Go to UniProtKB:  A0A0U1WF63
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A0U1WF63
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:
|  3D Structure
Entity ID: 7
MoleculeChains  Sequence LengthOrganismDetailsImage
GP-PDE domain-containing proteinL [auth B]848Staphylococcus phage 812Mutation(s): 0 
UniProt
Find proteins for A0A0U1WFD7 (Staphylococcus phage 812)
Explore A0A0U1WFD7 
Go to UniProtKB:  A0A0U1WFD7
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A0U1WFD7
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:
|  3D Structure
Entity ID: 8
MoleculeChains  Sequence LengthOrganismDetailsImage
NlpC/P60 domain-containing proteinO [auth A]295Staphylococcus phage 812Mutation(s): 0 
UniProt
Find proteins for A0A0U1UXW0 (Staphylococcus phage 812)
Explore A0A0U1UXW0 
Go to UniProtKB:  A0A0U1UXW0
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A0U1UXW0
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.1
MODEL REFINEMENTPHENIX

Structure Validation

View Full Validation Report



View more in-depth experimental data

Entry History 

& Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
European Research Council (ERC)European Union101043452
Other governmentCzech RepublicLX22NP05103

Revision History  (Full details and data files)

  • Version 1.0: 2025-04-09
    Type: Initial release