9ER3 | pdb_00009er3

Cyanide dihydratase from Bacillus pumilus C1 E155R variant with altered helical twist.

PDB DOI: https://doi.org/10.2210/pdb9ER3/pdb
EM Map EMD-19910: EMDB EMDataResource

Classification: HYDROLASE
Organism(s): Bacillus pumilus
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2024-03-22 Released: 2024-04-10
Deposition Author(s): Dlamini, L.S., Woodward, J.D., Sewell, B.T.
Funding Organization(s): National Research Foundation in South Africa

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.80 Å
Aggregation State: FILAMENT
Reconstruction Method: SINGLE PARTICLE

Starting Model: other
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wwPDB Validation 3D Report Full Report

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This is version 1.0 of the entry. See complete history.

Literature

Cyanide dihydratase from Bacillus pumilus C1 E155R variant with altered helical twist

Dlamini, L.S., Woodward, J.D., Sewell, B.T.

To be published.

Macromolecule Content

Total Structure Weight: 687.78 kDa
Atom Count: 48,373
Modeled Residue Count: 6,061
Deposited Residue Count: 6,061
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cyanide dihydratase	A [auth S] B [auth H] C [auth L] D [auth B] E [auth A] A [auth S], B [auth H], C [auth L], D [auth B], E [auth A], F [auth D], G [auth M], H [auth F], I [auth G], J [auth K], K [auth I], L [auth C], M [auth N], N [auth E], O, P, Q [auth J], R, S [auth T]	319	Bacillus pumilus	Mutation(s): 1 Gene Names: cynD
UniProt
Find proteins for Q8GGL4 (Bacillus pumilus) Explore Q8GGL4 Go to UniProtKB: Q8GGL4
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8GGL4
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.80 Å
Aggregation State: FILAMENT
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
RECONSTRUCTION	RELION	4.0.1
MODEL REFINEMENT	PHENIX	1.2105207
MODEL REFINEMENT	UCSF ChimeraX	1.6.1
MODEL REFINEMENT	Coot	0.9.8.1

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2024-04-10

Deposition Author(s):

Funding Organization	Location	Grant Number
National Research Foundation in South Africa	South Africa	--

Revision History (Full details and data files)

Version 1.0: 2024-04-10
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.