9EQH

WWP2 WW2-2,3-linker-HECT (WWP2-LH)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.275 
  • R-Value Work: 0.213 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Expanding the inhibitor space of the WWP1 and WWP2 HECT E3 ligases.

Dudey, A.P.Rigby, J.M.Hughes, G.R.Stephenson, G.R.Storr, T.E.Chantry, A.Hemmings, A.M.

(2024) J Enzyme Inhib Med Chem 39: 2394895-2394895

  • DOI: https://doi.org/10.1080/14756366.2024.2394895
  • Primary Citation of Related Structures:  
    9EQH, 9EQK

  • PubMed Abstract: 

    The HECT E3 ubiquitin ligases 1 (WWP1) and 2 (WWP2) are responsible for the ubiquitin-mediated degradation of key tumour suppressor proteins and are dysregulated in various cancers and diseases. Here we expand their limited inhibitor space by identification of NSC-217913 displaying a WWP1 IC 50 of 158.3 µM (95% CI = 128.7, 195.1 µM). A structure-activity relationship by synthesis approach aided by molecular docking led to compound 11 which displayed increased potency with an IC 50 of 32.7 µM (95% CI = 24.6, 44.3 µM) for WWP1 and 269.2 µM (95% CI = 209.4, 347.9 µM) for WWP2. Molecular docking yielded active site-bound poses suggesting that the heterocyclic imidazo[4,5- b ]pyrazine scaffold undertakes a π-stacking interaction with the phenolic group of tyrosine, and the ethyl ester enables strong ion-dipole interactions. Given the therapeutic potential of WWP1 and WWP2, we propose that compound 11 may provide a basis for future lead compound development.


  • Organizational Affiliation

    School of Biological Sciences, University of East Anglia, Norwich, UK.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Isoform 2 of NEDD4-like E3 ubiquitin-protein ligase WWP2447Homo sapiensMutation(s): 0 
Gene Names: WWP2
EC: 2.3.2.26
UniProt & NIH Common Fund Data Resources
Find proteins for O00308 (Homo sapiens)
Explore O00308 
Go to UniProtKB:  O00308
PHAROS:  O00308
GTEx:  ENSG00000198373 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO00308
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.275 
  • R-Value Work: 0.213 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 44.009α = 90
b = 90.27β = 90
c = 111.177γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
autoPROCdata scaling
PHASERphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
BigC Cancer CharityUnited KingdomResearch Grant 19-14R

Revision History  (Full details and data files)

  • Version 1.0: 2024-05-15
    Type: Initial release
  • Version 1.1: 2024-09-18
    Changes: Database references