9EO4

Outward-open structure of human dopamine transporter bound to cocaine

• PDB DOI: https://doi.org/10.2210/pdb9EO4/pdb
• EM Map EMD-19845: EMDB EMDataResource

• Classification: MEMBRANE PROTEIN
• Organism(s): Homo sapiens
• Expression System: Homo sapiens
• Mutation(s): No 
• Membrane Protein: Yes  PDBTM


• Deposited: 2024-03-14 Released: 2024-07-03 
• Deposition Author(s): Nielsen, J.C., Salomon, K., Kalenderoglou, I.E., Bargmeyer, S., Pape, T., Shahsavar, A., Loland, C.J.
• Funding Organization(s): Lundbeckfonden, The Carlsberg Foundation, Independent Research Fund Denmark - Technology and Production Sciences, H2020 Marie Curie Actions of the European Commission, Maersk Foundation

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 2.66 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

The molecular basis for cocaine binding to the human dopamine transporter

Nielsen, J.C., Salomon, K., Kalenderoglou, I.E., Bargmeyer, S., Pape, T., Shahsavar, A., Loland, C.J.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by (software)

Biological Assembly Evidence: electron microscopy

Macromolecule Content

• Total Structure Weight: 74.22 kDa 
• Atom Count: 4,459 
• Modelled Residue Count: 546 
• Deposited Residue Count: 660 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Sodium-dependent dopamine transporter	A [auth B]	660	Homo sapiens	Mutation(s): 0  Gene Names: SLC6A3, DAT1 Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for Q01959 (Homo sapiens) Explore Q01959  Go to UniProtKB:  Q01959
GTEx:  ENSG00000142319

Small Molecules

Ligands 5 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
Y01	C [auth B]	CHOLESTEROL HEMISUCCINATE C31 H50 O4 WLNARFZDISHUGS-MIXBDBMTSA-N
CLR	B, D [auth B], E [auth B]	CHOLESTEROL C27 H46 O HVYWMOMLDIMFJA-DPAQBDIFSA-N
COC (Subject of Investigation/LOI)	H [auth B]	COCAINE C17 H21 N O4 ZPUCINDJVBIVPJ-LJISPDSOSA-N
CL	G [auth B]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M
NA	F [auth B]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 2.66 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-07-03 
Deposition Author(s): Nielsen, J.C., Salomon, K., Kalenderoglou, I.E., Bargmeyer, S., Pape, T., Shahsavar, A., Loland, C.J.

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Funding Organization	Location	Grant Number
Lundbeckfonden	Denmark	R344-2020-1020
The Carlsberg Foundation	Denmark	CF20-0345
Independent Research Fund Denmark - Technology and Production Sciences	Denmark	3101-00381B
H2020 Marie Curie Actions of the European Commission	European Union	860954
Maersk Foundation	Denmark	L-2022-00324
Maersk Foundation	Denmark	L-2021-00122

Revision History  

• Version 1.0: 2024-07-03
  Type: Initial release