9EF0 | pdb_00009ef0

EM structure of cytochrome P450 reductase


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.33 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Cryo-EM reveals an ensemble of cytochrome P450 reductase conformations in solution.

Lepesheva, G.I.Hargrove, T.Y.Ren, Y.

(2026) Protein Sci 35: e70448-e70448

  • DOI: https://doi.org/10.1002/pro.70448
  • Primary Citation of Related Structures:  
    9EF0

  • PubMed Abstract: 

    The eukaryotic electron transport system, mediated by cytochrome P450 reductase (CPR), plays a crucial role in driving myriads of reactions involved in the biosynthesis of physiologically active compounds (such as sterols, steroids, vitamins, and natural products), as well as in the metabolism of drugs, toxins, and carcinogens. CPR is a diflavin-containing enzyme found ubiquitously on the cytosolic side of the endoplasmic reticulum. While several crystal structures of CPR are available, its conformational states in solution, along with the molecular details of action, remain debatable. Here, we determined the 3.3 Å cryo-EM structure of rat CPR, marking the first electron microscopy structure of this relatively small protein (77 kDa). In this structure, the full-length, fully active enzyme adopts a compact conformation, which, however, is more relaxed than in crystal structures. Moreover, we structurally characterized less populated variations of compact CPR conformations and identified a fraction of molecules (~20%) with the FMN-binding domain either not visible or positioned far from the rest of the catalytic core. These results support the idea that large-scale interdomain rearrangements serve as the structural basis for CPR function and suggest that cryo-EM techniques can help uncover the intricate molecular mechanisms governing the CPR-mediated electron transfer cycle.


  • Organizational Affiliation
    • Department of Biochemistry, Vanderbilt University School of Medicine, Nashville, Tennessee, USA.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
NADPH--cytochrome P450 reductase678Rattus norvegicusMutation(s): 0 
Gene Names: Por
EC: 1.6.2.4
UniProt
Find proteins for P00388 (Rattus norvegicus)
Explore P00388 
Go to UniProtKB:  P00388
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP00388
Sequence Annotations
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  • Reference Sequence
Small Molecules
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.33 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.21.1_5286:

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM151876

Revision History  (Full details and data files)

  • Version 1.0: 2024-12-04
    Type: Initial release
  • Version 1.1: 2025-12-17
    Changes: Database references
  • Version 1.2: 2026-02-04
    Changes: Database references