High resolution TMPRSS2 structure following acylation by nafamostat
Fraser, B.J., Dong, A., Kutera, M., Seitova, A., Li, Y., Hutchinson, A., Edwards, A., Benard, F., Levon, H., Arrowsmith, C.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Transmembrane protease serine 2 | A [auth B] | 249 | Homo sapiens | Mutation(s): 0 Gene Names: TMPRSS2 EC: 3.4.21.122 | ![]() |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for O15393 (Homo sapiens) Explore O15393 Go to UniProtKB: O15393 | |||||
PHAROS: O15393 GTEx: ENSG00000184012 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O15393 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Transmembrane protease serine 2 non-catalytic chain | B [auth A] | 110 | Homo sapiens | Mutation(s): 6 Gene Names: TMPRSS2, PRSS10 EC: 3.4.21.122 | ![]() |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for O15393 (Homo sapiens) Explore O15393 Go to UniProtKB: O15393 | |||||
PHAROS: O15393 GTEx: ENSG00000184012 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O15393 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
CIT Query on CIT | C [auth B] | CITRIC ACID C6 H8 O7 KRKNYBCHXYNGOX-UHFFFAOYSA-N | |||
VU4 (Subject of Investigation/LOI) Query on VU4 | E [auth B] | 4-(2-aminoethyl)benzoic acid C9 H11 N O2 MRBFWTDIRYEDBQ-UHFFFAOYSA-N | |||
EDO Query on EDO | D [auth B], F [auth B], G [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
UNX (Subject of Investigation/LOI) Query on UNX | H [auth A] | UNKNOWN ATOM OR ION X |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 60.853 | α = 90 |
b = 51.392 | β = 91.01 |
c = 64.625 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
HKL-3000 | data scaling |
HKL-3000 | data reduction |
PHASER | phasing |
Funding Organization | Location | Grant Number |
---|---|---|
Canadian Institutes of Health Research (CIHR) | Canada | FDN154328 |
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | P30 GM124165 |