9E6G | pdb_00009e6g

Deposited: 2024-10-30 Released: 2026-06-24
Deposition Author(s): Thakur, B., Acharya, P.
Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

Experimental Data Snapshot

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Thakur, B., Acharya, P.

To be published.

Macromolecule Content

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Immunoglobulin heavy constant gamma 1	A, B	214	Homo sapiens	Mutation(s): 2 Gene Names: IGHG1
UniProt & NIH Common Fund Data Resources
Find proteins for P01857 (Homo sapiens) Explore P01857 Go to UniProtKB: P01857
PHAROS: P01857 GTEx: ENSG00000211896
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P01857
Glycosylation
Glycosylation Sites: 1	Glycosylation Focus chain A Focus chain B	Go to GlyGen: P01857-2
Sequence Annotations Expand
Reference Sequence

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| 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
B-cell antigen receptor complex-associated protein alpha chain	C	93	Homo sapiens	Mutation(s): 0 Gene Names: CD79A, IGA, MB1
UniProt & NIH Common Fund Data Resources
Find proteins for P11912 (Homo sapiens) Explore P11912 Go to UniProtKB: P11912
PHAROS: P11912 GTEx: ENSG00000105369
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P11912
Glycosylation
Glycosylation Sites: 3	Glycosylation Focus chain C	Go to GlyGen: P11912-1
Sequence Annotations Expand
Reference Sequence

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| 3D Structure

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
B-cell antigen receptor complex-associated protein beta chain	D	100	Homo sapiens	Mutation(s): 0 Gene Names: CD79B, B29, IGB
UniProt & NIH Common Fund Data Resources
Find proteins for P40259 (Homo sapiens) Explore P40259 Go to UniProtKB: P40259
PHAROS: P40259 GTEx: ENSG00000007312
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P40259
Glycosylation
Glycosylation Sites: 3	Glycosylation Focus chain D	Go to GlyGen: P40259-1
Sequence Annotations Expand
Reference Sequence

Entity ID: 4
Molecule	Chains	Length	2D Diagram	Glycosylation	D Interactions
alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	E, G [auth F]	5		N-Glycosylation	Interactions Focus chain E Focus chain G [auth F] Interactions & Density Focus chain E Focus chain G [auth F]

Entity ID: 5
Molecule	Chains	Length	2D Diagram	Glycosylation	D Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	F [auth H]	2		N-Glycosylation	Interactions Focus chain F [auth H] Interactions & Density Focus chain F [auth H]

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NAG (Subject of Investigation/LOI) Query on NAG Download:Ideal Coordinates CCD File SDF format, chain H [auth C] SDF format, chain I [auth C] SDF format, chain J [auth C] SDF format, chain K [auth D] SDF format, chain L [auth D] MOL2 format, chain H [auth C] MOL2 format, chain I [auth C] MOL2 format, chain J [auth C] MOL2 format, chain K [auth D] MOL2 format, chain L [auth D] mmCIF format, chain H [auth C] mmCIF format, chain I [auth C] mmCIF format, chain J [auth C] mmCIF format, chain K [auth D] mmCIF format, chain L [auth D]	H [auth C], I [auth C], J [auth C], K [auth D], L [auth D]	2-acetamido-2-deoxy-beta-D-glucopyranose C₈ H₁₅ N O₆ OVRNDRQMDRJTHS-FMDGEEDCSA-N		Interactions Focus chain H [auth C] Focus chain I [auth C] Focus chain J [auth C] Focus chain K [auth D] Focus chain L [auth D] Interactions & Density Focus chain H [auth C] Focus chain I [auth C] Focus chain J [auth C] Focus chain K [auth D] Focus chain L [auth D]