9DYV | pdb_00009dyv

Assembly and functional mechanisms of the Hsp70-Hsp40 chaperone machinery


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report

Validation slider image for 9DYV

This is version 1.2 of the entry. See complete history

Literature

Mechanisms of assembly and function of the Hsp70-Hsp40 chaperone machinery.

Jiang, Y.Ibrahim, Z.Xia, Y.Clay, M.Myasnikov, A.Immadisetty, K.Xia, Z.Tang, L.Rossi, P.Ganguly, P.Liu, J.Miller, D.Che, M.Palacios, S.M.Kramer, G.Bukau, B.Kalodimos, C.G.

(2025) Mol Cell 85: 4032

  • DOI: https://doi.org/10.1016/j.molcel.2025.09.023
  • Primary Citation Related Structures: 
    8W1M, 9DYU, 9DYV

  • PubMed Abstract: 

    Hsp70 and Hsp40 molecular chaperones form a central machinery that remodels client proteins involved in numerous biological processes. Here, we integrated cryo-electron microscopy and nuclear magnetic resonance spectroscopy to determine the architecture of the full-length Hsp70-Hsp40 machinery. The structure of the complex in a physiologically inhibited state reveals distinct regulatory mechanisms. In the active state, the Hsp40 glycine-phenylalanine (G/F)-rich region acts as a pseudo-substrate for Hsp70, directly modulating refolding. This region also maintains Hsp40 in an autoinhibited state; upon binding to Hsp70, the inhibition is disrupted, exposing a cryptic client-binding site that enables client engagement and refolding. Transitions between these states are central to controlling refolding efficiency. Disrupting either the autoinhibited state or the G/F-Hsp70 interaction impairs function and elicits a compensatory heat shock response in cells. Our findings uncover the regulatory dynamics of a fundamental chaperone system, with broad implications for understanding protein homeostasis and the cellular response to stress.


  • Organizational Affiliation
    • State Key Laboratory of Pharmaceutical Biotechnology, Department of Oncology, Nanjing Drum Tower Hospital, School of Life Sciences, Chemistry and Biomedicine Innovation Center (ChemBIC), Nanjing University, Nanjing, China; Department of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN, USA.

Macromolecule Content 

  • Total Structure Weight: 13.43 kDa 
  • Atom Count: 938 
  • Modeled Residue Count: 116 
  • Deposited Residue Count: 118 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Chaperone protein DnaJ 2118Thermus thermophilusMutation(s): 0 
Gene Names: dnaJ2TTHA1489
UniProt
Find proteins for Q56237 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
Explore Q56237 
Go to UniProtKB:  Q56237
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ56237
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Cancer Institute (NIH/NCI)United StatesR35 GM122462

Revision History  (Full details and data files)

  • Version 1.0: 2025-10-22
    Type: Initial release
  • Version 1.1: 2025-10-29
    Changes: Database references
  • Version 1.2: 2025-11-19
    Changes: Database references