Download MendeleyCrystal structure of a SARS-CoV-2 20-mer RNA in complex with FAB BL3-6S97N
Lovell, S., Wang, J.To be published.
9DN4
Crystal structure of a SARS-CoV-2 20-mer RNA in complex with FAB BL3-6S97N
- PDB DOI: https://doi.org/10.2210/pdb9DN4/pdb
- Classification: IMMUNE SYSTEM
- Organism(s): Mus musculus, Severe acute respiratory syndrome coronavirus 2
- Expression System: Cricetulus griseus
- Mutation(s): No
- Deposited: 2024-09-16 Released: 2024-09-25
- Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), National Institutes of Health/Office of the Director
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.223
- R-Value Work: 0.176
- R-Value Observed: 0.178
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| FAB BL3-6S97N HEAVY CHAIN | 250 | Mus musculus | Mutation(s): 0 |  | |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| FAB BL3-6S97N LIGHT CHAIN | 233 | Mus musculus | Mutation(s): 0 |  | |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| RNA (5'-R(P*CP*UP*CP*GP*UP*CP*UP*GP*AP*AP*AP*CP*AP*CP*GP*GP*AP*GP*AP*G)-3') | 20 | Severe acute respiratory syndrome coronavirus 2 |  | ||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | I [auth A] L [auth B] M [auth B] R [auth C] S [auth C] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| GOL Query on GOL | G [auth A], J [auth B], N [auth C], T [auth D], U [auth D] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| CL Query on CL | H [auth A] K [auth B] O [auth C] P [auth C] Q [auth C] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.223
- R-Value Work: 0.176
- R-Value Observed: 0.178
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 64.726 | α = 90 |
| b = 68.025 | β = 100.16 |
| c = 118.615 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| Aimless | data scaling |
| XDS | data reduction |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2024-09-25 Deposition Author(s): Lovell, S., Cooper, A., Battaile, K.P., Hegde, S., Wang, J.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | R35GM147498 |
| National Institutes of Health/Office of the Director | United States | S10OD030394 |
Revision History (Full details and data files)
- Version 1.0: 2024-09-25
Type: Initial release
