9DC0 | pdb_00009dc0

Crystal Structure of European Robin CRY1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.91 Å
  • R-Value Free: 
    0.274 (Depositor), 0.275 (DCC) 
  • R-Value Work: 
    0.209 (Depositor), 0.210 (DCC) 
  • R-Value Observed: 
    0.213 (Depositor) 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structure of European robin cryptochrome 1 reveals a role in circadian rhythms, not magnetoreception.

Wickramaratne, A.C.Rasmussen, E.S.Chelliah, Y.Schuhmann, F.Solov'yov, I.A.Mouritsen, H.Green, C.B.Zoltowski, B.D.Takahashi, J.S.

(2025) iScience 28: 114015-114015

  • DOI: https://doi.org/10.1016/j.isci.2025.114015
  • Primary Citation of Related Structures:  
    9DC0

  • PubMed Abstract: 

    Cryptochromes (CRYs) play critical roles in regulating diverse physiological functions, including circadian rhythms and neuronal firing in light-dependent or -independent fashions. Structural studies of CRYs have highlighted common features, such as the photolyase homology region (PHR), but they also reveal key differences, particularly in the binding of the flavin adenine dinucleotide (FAD) cofactor, leading to a long-standing debate, namely, whether Type I CRYs can function as FAD-dependent photosensors. This study solves the first crystal structure of a Type II CRY from a migratory songbird, namely, the European robin ( Erithacus rubecula ) CRY1. Structural, biochemical, and computational analyses of erCRY1 reveal that, unlike light-activated Type I and IV CRYs, Type II CRYs do not bind FAD and employ an open primary pocket for protein-protein interactions. These findings offer new insights into the structural basis of CRY function and suggest that migratory song-bird Type II CRYs function as circadian regulators, not magnetoreceptors.


  • Organizational Affiliation
    • Laboratory of Molecular Biology, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cryptochrome-1515Erithacus rubeculaMutation(s): 0 
Gene Names: CRY1b
UniProt
Find proteins for A0A7K7GUF1 (Erithacus rubecula)
Explore A0A7K7GUF1 
Go to UniProtKB:  A0A7K7GUF1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A7K7GUF1
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.91 Å
  • R-Value Free:  0.274 (Depositor), 0.275 (DCC) 
  • R-Value Work:  0.209 (Depositor), 0.210 (DCC) 
  • R-Value Observed: 0.213 (Depositor) 
Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 44.115α = 90
b = 79.602β = 90
c = 127.986γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XDSdata scaling
PHENIXphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United States2R15GM109282
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR35 GM127122
Howard Hughes Medical Institute (HHMI)United StatesInvestigator Award

Revision History  (Full details and data files)

  • Version 1.0: 2025-08-27
    Type: Initial release
  • Version 1.1: 2026-03-18
    Changes: Database references