9D2F | pdb_00009d2f

3D structure and atomic model of RS3 of mouse respiratory cilia

  • Classification: STRUCTURAL PROTEIN
  • Organism(s): Mus musculus
  • Mutation(s): No 

  • Deposited: 2024-08-08 Released: 2025-08-13 
  • Deposition Author(s): Yanhe, Z., Xuewu, Z., Daniela, N.
  • Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), Cancer Prevention and Research Institute of Texas (CPRIT)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history. 


Literature

The cryo-EM structure of mouse radial spoke 3 reveals a unique metabolic and regulatory hub in cilia

Yanhe, Z., Xuewu, Z., Daniela, N.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Adenylate kinase 91,894Mus musculusMutation(s): 0 
EC: 2.7.4.3 (PDB Primary Data), 2.7.4.4 (UniProt), 2.7.4.6 (UniProt)
UniProt
Find proteins for G3UYQ4 (Mus musculus)
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UniProt GroupG3UYQ4
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Leucine-rich repeat-containing protein 23
B, C
340Mus musculusMutation(s): 0 
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Find proteins for O35125 (Mus musculus)
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IMPC:  MGI:1315192
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Serine/threonine/tyrosine interacting-like 1D [auth H]321Mus musculusMutation(s): 0 
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Find proteins for Q9DAR2 (Mus musculus)
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IMPC:  MGI:1923821
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UniProt GroupQ9DAR2
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 91E [auth N]783Mus musculusMutation(s): 0 
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IMPC:  MGI:2443598
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UniProt GroupQ8BRC6
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Actin, aortic smooth muscleF [auth O],
I [auth R]		377Mus musculusMutation(s): 0 
EC: 3.6.4
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IMPC:  MGI:87909
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Axonemal dynein light intermediate polypeptide 1G [auth P],
H [auth Q]		258Mus musculusMutation(s): 0 
UniProt
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Centrin-2J [auth S]172Mus musculusMutation(s): 0 
UniProt
Find proteins for Q9R1K9 (Mus musculus)
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UniProt GroupQ9R1K9
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Dynein axonemal heavy chain 1K [auth U]4,250Mus musculusMutation(s): 0 
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IMPC:  MGI:107721
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 57L [auth W],
M [auth X]		1,249Mus musculusMutation(s): 0 
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Find proteins for Q9D180 (Mus musculus)
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IMPC:  MGI:2686209
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 43N [auth Y]1,682Mus musculusMutation(s): 0 
UniProt
Find proteins for E9Q7R9 (Mus musculus)
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UniProt GroupE9Q7R9
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 44O [auth Z]1,843Mus musculusMutation(s): 0 
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Find proteins for E9Q5M6 (Mus musculus)
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IMPC:  MGI:1277238
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UniProt GroupE9Q5M6
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
Dynein, axonemal, heavy chain 6P [auth T]4,144Mus musculusMutation(s): 0 
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IMPC:  MGI:107744
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
MORN repeat-containing protein 5Q [auth I]170Mus musculusMutation(s): 0 
UniProt
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 61R [auth J]1,252Mus musculusMutation(s): 0 
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IMPC:  MGI:1926024
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UniProt GroupQ8CEL2
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 251S [auth K]1,299Mus musculusMutation(s): 0 
UniProt
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
Tetratricopeptide repeat protein 29T [auth L]471Mus musculusMutation(s): 0 
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IMPC:  MGI:1920551
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UniProt GroupE9QLU4
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
Zinc finger, MYND domain containing 12U [auth M]363Mus musculusMutation(s): 0 
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IMPC:  MGI:2140259
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UniProt GroupA2BGJ5
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
Malate dehydrogenase, cytoplasmicV [auth E]334Mus musculusMutation(s): 0 
EC: 1.1.1.37 (PDB Primary Data), 1.1.1.96 (PDB Primary Data)
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Find proteins for P14152 (Mus musculus)
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IMPC:  MGI:97051
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UniProt GroupP14152
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
Putative malate dehydrogenase 1BW [auth F]500Mus musculusMutation(s): 0 
EC: 1.1.1
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Find proteins for Q5F204 (Mus musculus)
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IMPC:  MGI:1923918
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UniProt GroupQ5F204
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
UPF0728 protein C10orf53 homologX [auth V]93Mus musculusMutation(s): 0 
UniProt
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UniProt GroupQ3KNL4
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
A kinase (PRKA) anchor protein 14Y [auth a]536Mus musculusMutation(s): 0 
UniProt
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Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
cAMP-dependent protein kinase type II-alpha regulatory subunitZ [auth b]401Mus musculusMutation(s): 0 
UniProt
Find proteins for P12367 (Mus musculus)
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Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
Ciliogenesis-associated TTC17-interacting proteinAA [auth c]520Mus musculusMutation(s): 0 
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IMPC:  MGI:2685062
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UniProt GroupB9EKE5
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Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
Adenylate kinase 7BA [auth D],
CA [auth G]		723Mus musculusMutation(s): 0 
EC: 2.7.4.3 (PDB Primary Data), 2.7.4.6 (UniProt)
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Find proteins for F8WIC0 (Mus musculus)
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IMPC:  MGI:1926051
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UniProt GroupF8WIC0
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION5

Structure Validation

View Full Validation Report



View more in-depth experimental data
Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR01GM083122
Cancer Prevention and Research Institute of Texas (CPRIT)United StatesRR140082
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR35GM130289

Revision History  (Full details and data files)

  • Version 1.0: 2025-08-13
    Type: Initial release