9CYN | pdb_00009cyn

Flagellar filament sheath protein FlaA1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.82 Å
  • R-Value Free: 
    0.215 (Depositor), 0.215 (DCC) 
  • R-Value Work: 
    0.184 (Depositor), 0.184 (DCC) 
  • R-Value Observed: 
    0.186 (Depositor) 

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

Validation slider image for 9CYN

This is version 1.1 of the entry. See complete history

Literature

Core-sheath coupling controls flagellar curvature and motility in Leptospira.

San Martin, F.Brady, M.R.Fule, L.Nouchikian, L.Rodriguez, A.Duchateau, M.Mondino, S.Larrieux, N.Wunder Jr., E.A.Ko, A.I.Rey, M.Chamot-Rooke, J.Duran, R.Trajtenberg, F.Picardeau, M.Sindelar, C.V.Buschiazzo, A.

(2026) Nat Commun 17

  • DOI: https://doi.org/10.1038/s41467-026-75995-6
  • Primary Citation Related Structures: 
    10LK, 10LL, 10LM, 9CYN

  • PubMed Abstract: 

    Spirochaete pathogens are among the most invasive bacteria known, causing syphilis, Lyme disease, and leptospirosis. Their tissue penetration depends on periplasmic flagellar filaments that, unlike other bacterial flagella, are encased in a spirochaete-specific multi-protein sheath and deform the cell body into motile waves. How these filaments achieve the mechanical properties needed for invasive motility has remained unclear. Here we determine complete atomic structures of the Leptospira endoflagellar filament, revealing an elaborate sheath of 9 to 12 distinct asymmetrically arranged proteins. We show that the flagellin variant forming the filament core determines sheath composition, producing curvatures ranging from ~3.5 µm -1 to ~5.6 µm -1 . The lower-curvature architecture, employed by pathogenic Leptospira interrogans, proves essential for motility in viscous environments and during infection. Thus, Leptospira achieves environment-specific motility through modular core-sheath coupling, linking atomic-scale structural plasticity to large-scale changes in swimming behaviour. Conservation of key sheath components suggests this mechanism may extend across spirochaetes.


  • Organizational Affiliation
    • Institut Pasteur de Montevideo, Laboratory of Molecular & Structural Microbiology, Montevideo, Uruguay.

Macromolecule Content 

  • Total Structure Weight: 87.44 kDa 
  • Atom Count: 5,528 
  • Modeled Residue Count: 643 
  • Deposited Residue Count: 771 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Endoflagellar filament sheath protein
A, B, C
257Leptospira borgpetersenii serovar Hardjo-bovisMutation(s): 0 
Gene Names: flaA-2LBJ_0704
UniProt
Find proteins for Q04UP1 (Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197))
Explore Q04UP1 
Go to UniProtKB:  Q04UP1
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ04UP1
Sequence Annotations
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Reference Sequence

Small Molecules

Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
SO4

Query on SO4



Download:Ideal Coordinates CCD File
E [auth A]
F [auth A]
H [auth B]
I [auth B]
J [auth B]
E [auth A],
F [auth A],
H [auth B],
I [auth B],
J [auth B],
L [auth C],
M [auth C]
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
CA
(Subject of Investigation/LOI)

Query on CA



Download:Ideal Coordinates CCD File
D [auth A],
G [auth B],
K [auth C]
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
YCM
Query on YCM
A, B, C
L-PEPTIDE LINKINGC5 H10 N2 O3 SCYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.82 Å
  • R-Value Free:  0.215 (Depositor), 0.215 (DCC) 
  • R-Value Work:  0.184 (Depositor), 0.184 (DCC) 
  • R-Value Observed: 0.186 (Depositor) 
Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 81.417α = 90
b = 105.776β = 90
c = 108.734γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
Aimlessdata scaling
XDSdata reduction
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Agencia Nacional de Investigacion e Innovacion (ANII)UruguayFCE_3_2016_1_126797

Revision History  (Full details and data files)

  • Version 1.0: 2026-03-18
    Type: Initial release
  • Version 1.1: 2026-09-09
    Changes: Database references