9CPL

The ubiquitin-associated domain of human thirty-eight negative kinase 1, fused to the 2TEL crystallization chaperone via a 2-glycine linker

• PDB DOI: https://doi.org/10.2210/pdb9CPL/pdb

• Classification: ONCOPROTEIN
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): Yes 


• Deposited: 2024-07-18 Released: 2024-08-14 
• Deposition Author(s): Samarawickrama, P., Averett, J., Doukov, T., Moody, J.D.
• Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

---

Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Free: 0.263 
• R-Value Work: 0.229 
• R-Value Observed: 0.231 

Starting Models: experimental

Literature

1TEL Fusions Outperform 2TEL and 3TEL Fusions in Controlled Comparisons

Samarawickrama, P., Ludlow, K., Probst, R., Abiodun, W., Averett, J., Hansen, D., Doukov, T., Moody, J.D.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 29.14 kDa 
• Atom Count: 1,808 
• Modelled Residue Count: 234 
• Deposited Residue Count: 251 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
2TEL/Non-receptor tyrosine-protein kinase TNK1 fusion protein	A	251	Homo sapiens	Mutation(s): 5  Gene Names: ETV6, TEL, TEL1, TNK1 EC: 2.7.10.2
UniProt & NIH Common Fund Data Resources
Find proteins for P41212 (Homo sapiens) Explore P41212  Go to UniProtKB:  P41212
PHAROS:  P41212 GTEx:  ENSG00000139083
Find proteins for Q13470 (Homo sapiens) Explore Q13470  Go to UniProtKB:  Q13470
PHAROS:  Q13470 GTEx:  ENSG00000174292
UniProt Groups	P41212Q13470

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
FMT (Subject of Investigation/LOI)	B [auth A]	FORMIC ACID C H2 O2 BDAGIHXWWSANSR-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Free: 0.263 
• R-Value Work: 0.229 
• R-Value Observed: 0.231 
• Space Group: P 6₅
• Diffraction Data: https://doi.org/10.18430/M39CPL

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 105.725	α = 90
b = 105.725	β = 90
c = 50.917	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
Coot	model building
autoPROC	data reduction
autoPROC	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-08-14 
Deposition Author(s): Samarawickrama, P., Averett, J., Doukov, T., Moody, J.D.

---

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	1R15GM146209-01

Revision History  

• Version 1.0: 2024-08-14
  Type: Initial release