Crystal structure of human sirtuin 3 fragment (residues 118-399) bound to intermediates from reaction with NAD and inhibitor NH6-10
Fenwick, M.K., Young, J.H., Lin, H.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
NAD-dependent protein deacetylase sirtuin-3, mitochondrial | 282 | Homo sapiens | Mutation(s): 0  Gene Names: SIRT3 EC: 2.3.1.286 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9NTG7 (Homo sapiens) Explore Q9NTG7  Go to UniProtKB:  Q9NTG7 | |||||
PHAROS:  Q9NTG7 GTEx:  ENSG00000142082  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9NTG7 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
5I7 (Subject of Investigation/LOI) Query on 5I7 | G [auth B] | (phenylmethyl) ~{N}-[(2~{S})-6-[[(2~{R},3~{a}~{R},5~{R},6~{R},6~{a}~{R})-5-[[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxymethyl]-6-oxidanyl-2-tridecyl-3~{a},5,6,6~{a}-tetrahydrofuro[2,3-d][1,3]oxathiol-2-yl]amino]-1-oxidanylidene-1-[2-(triethyl-$l^{4}-azanyl)ethylamino]hexan-2-yl]carbamate C51 H86 N9 O16 P2 S DVXJRXQMZVZLQP-OACJPHNQSA-O | |||
5IA (Subject of Investigation/LOI) Query on 5IA | D [auth A] | 2-{[(2S)-6-[(Z)-(1-{[(2R,3R,4R,5R)-5-({[(R)-{[(R)-{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}methyl)-4-hydroxy-2-sulfanyloxolan-3-yl]oxy}tetradecylidene)amino]-2-{[(benzyloxy)carbonyl]amino}hexanoyl]amino}-N,N,N-triethylethan-1-aminium (non-preferred name) C51 H86 N9 O16 P2 S NDEIYVWRFNKRPD-LQYQRRKDSA-O | |||
PG4 Query on PG4 | F [auth B] | TETRAETHYLENE GLYCOL C8 H18 O5 UWHCKJMYHZGTIT-UHFFFAOYSA-N | |||
ZN (Subject of Investigation/LOI) Query on ZN | C [auth A], E [auth B] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 39.433 | α = 90 |
b = 63.193 | β = 90.79 |
c = 114.608 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
Aimless | data scaling |
PHASER | phasing |
PDB_EXTRACT | data extraction |
Coot | model building |
XDS | data reduction |
Funding Organization | Location | Grant Number |
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National Institutes of Health/National Institute of Diabetes and Digestive and Kidney Disease (NIH/NIDDK) | United States | DK107868-04 |
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | GM124165-01 |
National Institutes of Health/Office of the Director | United States | S10OD021527 |
Department of Energy (DOE, United States) | United States | DE-AC02-06CH11357 |