9CAS | pdb_00009cas

Bat SARS-like Coronavirus RsSHC014 Spike Protein


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Distinct pathways for evolution of enhanced receptor binding and cell entry in SARS-like bat coronaviruses.

Tse, A.L.Acreman, C.M.Ricardo-Lax, I.Berrigan, J.Lasso, G.Balogun, T.Kearns, F.L.Casalino, L.McClain, G.L.Chandran, A.M.Lemeunier, C.Amaro, R.E.Rice, C.M.Jangra, R.K.McLellan, J.S.Chandran, K.Miller, E.H.

(2024) PLoS Pathog 20: e1012704-e1012704

  • DOI: https://doi.org/10.1371/journal.ppat.1012704
  • Primary Citation of Related Structures:  
    9CAS

  • PubMed Abstract: 

    Understanding the zoonotic risks posed by bat coronaviruses (CoVs) is critical for pandemic preparedness. Herein, we generated recombinant vesicular stomatitis viruses (rVSVs) bearing spikes from divergent bat CoVs to investigate their cell entry mechanisms. Unexpectedly, the successful recovery of rVSVs bearing the spike from SHC014-CoV, a SARS-like bat CoV, was associated with the acquisition of a novel substitution in the S2 fusion peptide-proximal region (FPPR). This substitution enhanced viral entry in both VSV and coronavirus contexts by increasing the availability of the spike receptor-binding domain to recognize its cellular receptor, ACE2. A second substitution in the S1 N-terminal domain, uncovered through the rescue and serial passage of a virus bearing the FPPR substitution, further enhanced spike:ACE2 interaction and viral entry. Our findings identify genetic pathways for adaptation by bat CoVs during spillover and host-to-host transmission, fitness trade-offs inherent to these pathways, and potential Achilles' heels that could be targeted with countermeasures.


  • Organizational Affiliation
    • Department of Microbiology & Immunology, Albert Einstein College of Medicine, Bronx, New York, New York, United States of America.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Spike glycoprotein
A, B, C
1,271Bat SARS-like coronavirus RsSHC014Mutation(s): 0 
UniProt
Find proteins for U5WLK5 (Bat SARS-like coronavirus RsSHC014)
Explore U5WLK5 
Go to UniProtKB:  U5WLK5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupU5WLK5
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Welch FoundationUnited StatesF-0003-19620604

Revision History  (Full details and data files)

  • Version 1.0: 2024-12-11
    Type: Initial release