9C9K | pdb_00009c9k

Anti-OspA Fab 319-33

PDB DOI: https://doi.org/10.2210/pdb9C9K/pdb

Classification: IMMUNE SYSTEM
Organism(s): Homo sapiens
Expression System: Cricetulus griseus
Mutation(s): No

Deposited: 2024-06-14 Released: 2025-08-27
Deposition Author(s): Rudolph, M.J., Mantis, N.
Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.60 Å
R-Value Free:
0.200 (Depositor), 0.199 (DCC)
R-Value Work:
0.172 (Depositor), 0.173 (DCC)
R-Value Observed:
0.173 (Depositor)

Starting Models: experimental
View more details

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Anti-OspA Fab 319-33

Rudolph, M.J., Mantis, N.

To be published.

Macromolecule Content

Total Structure Weight: 50.62 kDa
Atom Count: 3,753
Modeled Residue Count: 423
Deposited Residue Count: 438
Unique protein chains: 2

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
319-33 monoclonal Fab Heavy Chain	A [auth H]	223	Homo sapiens	Mutation(s): 0

Find similar proteins by:

| 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
319-33 monoclonal Fab Light Chain	B [auth L]	215	Homo sapiens	Mutation(s): 0

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
IMD Query on IMD Download:Ideal Coordinates CCD File SDF format, chain BA [auth H] SDF format, chain CA [auth H] SDF format, chain IB [auth L] SDF format, chain JB [auth L] SDF format, chain KB [auth L] SDF format, chain LB [auth L] SDF format, chain MB [auth L] MOL2 format, chain BA [auth H] MOL2 format, chain CA [auth H] MOL2 format, chain IB [auth L] MOL2 format, chain JB [auth L] MOL2 format, chain KB [auth L] MOL2 format, chain LB [auth L] MOL2 format, chain MB [auth L] mmCIF format, chain BA [auth H] mmCIF format, chain CA [auth H] mmCIF format, chain IB [auth L] mmCIF format, chain JB [auth L] mmCIF format, chain KB [auth L] mmCIF format, chain LB [auth L] mmCIF format, chain MB [auth L]	BA [auth H] CA [auth H] IB [auth L] JB [auth L] KB [auth L] BA [auth H], CA [auth H], IB [auth L], JB [auth L], KB [auth L], LB [auth L], MB [auth L]	IMIDAZOLE C₃ H₅ N₂ RAXXELZNTBOGNW-UHFFFAOYSA-O		Interactions Focus chain BA [auth H] Focus chain CA [auth H] Focus chain IB [auth L] Focus chain JB [auth L] Focus chain KB [auth L] Focus chain LB [auth L] Focus chain MB [auth L] Interactions & Density Focus chain BA [auth H] Focus chain CA [auth H] Focus chain IB [auth L] Focus chain JB [auth L] Focus chain KB [auth L] Focus chain LB [auth L] Focus chain MB [auth L]
ZN Query on ZN Download:Ideal Coordinates CCD File SDF format, chain C [auth H] SDF format, chain D [auth H] SDF format, chain DA [auth L] SDF format, chain E [auth H] SDF format, chain EA [auth L] SDF format, chain F [auth H] SDF format, chain FA [auth L] SDF format, chain G [auth H] SDF format, chain GA [auth L] SDF format, chain H SDF format, chain HA [auth L] SDF format, chain I [auth H] SDF format, chain IA [auth L] SDF format, chain J [auth H] SDF format, chain JA [auth L] SDF format, chain KA [auth L] SDF format, chain LA [auth L] SDF format, chain MA [auth L] SDF format, chain NA [auth L] SDF format, chain OA [auth L] SDF format, chain PA [auth L] MOL2 format, chain C [auth H] MOL2 format, chain D [auth H] MOL2 format, chain DA [auth L] MOL2 format, chain E [auth H] MOL2 format, chain EA [auth L] MOL2 format, chain F [auth H] MOL2 format, chain FA [auth L] MOL2 format, chain G [auth H] MOL2 format, chain GA [auth L] MOL2 format, chain H MOL2 format, chain HA [auth L] MOL2 format, chain I [auth H] MOL2 format, chain IA [auth L] MOL2 format, chain J [auth H] MOL2 format, chain JA [auth L] MOL2 format, chain KA [auth L] MOL2 format, chain LA [auth L] MOL2 format, chain MA [auth L] MOL2 format, chain NA [auth L] MOL2 format, chain OA [auth L] MOL2 format, chain PA [auth L] mmCIF format, chain C [auth H] mmCIF format, chain D [auth H] mmCIF format, chain DA [auth L] mmCIF format, chain E [auth H] mmCIF format, chain EA [auth L] mmCIF format, chain F [auth H] mmCIF format, chain FA [auth L] mmCIF format, chain G [auth H] mmCIF format, chain GA [auth L] mmCIF format, chain H mmCIF format, chain HA [auth L] mmCIF format, chain I [auth H] mmCIF format, chain IA [auth L] mmCIF format, chain J [auth H] mmCIF format, chain JA [auth L] mmCIF format, chain KA [auth L] mmCIF format, chain LA [auth L] mmCIF format, chain MA [auth L] mmCIF format, chain NA [auth L] mmCIF format, chain OA [auth L] mmCIF format, chain PA [auth L]	C [auth H] D [auth H] DA [auth L] E [auth H] EA [auth L] C [auth H], D [auth H], DA [auth L], E [auth H], EA [auth L], F [auth H], FA [auth L], G [auth H], GA [auth L], H, HA [auth L], I [auth H], IA [auth L], J [auth H], JA [auth L], KA [auth L], LA [auth L], MA [auth L], NA [auth L], OA [auth L], PA [auth L]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain C [auth H] Focus chain D [auth H] Focus chain DA [auth L] Focus chain E [auth H] Focus chain EA [auth L] Focus chain F [auth H] Focus chain FA [auth L] Focus chain G [auth H] Focus chain GA [auth L] Focus chain H Focus chain HA [auth L] Focus chain I [auth H] Focus chain IA [auth L] Focus chain J [auth H] Focus chain JA [auth L] Focus chain KA [auth L] Focus chain LA [auth L] Focus chain MA [auth L] Focus chain NA [auth L] Focus chain OA [auth L] Focus chain PA [auth L] Interactions & Density Focus chain C [auth H] Focus chain D [auth H] Focus chain DA [auth L] Focus chain E [auth H] Focus chain EA [auth L] Focus chain F [auth H] Focus chain FA [auth L] Focus chain G [auth H] Focus chain GA [auth L] Focus chain H Focus chain HA [auth L] Focus chain I [auth H] Focus chain IA [auth L] Focus chain J [auth H] Focus chain JA [auth L] Focus chain KA [auth L] Focus chain LA [auth L] Focus chain MA [auth L] Focus chain NA [auth L] Focus chain OA [auth L] Focus chain PA [auth L]
EDO Query on EDO Download:Ideal Coordinates CCD File SDF format, chain NB [auth L] MOL2 format, chain NB [auth L] mmCIF format, chain NB [auth L]	NB [auth L]	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Interactions Focus chain NB [auth L] Interactions & Density Focus chain NB [auth L]
CL Query on CL Download:Ideal Coordinates CCD File SDF format, chain AA [auth H] SDF format, chain AB [auth L] SDF format, chain BB [auth L] SDF format, chain CB [auth L] SDF format, chain DB [auth L] SDF format, chain EB [auth L] SDF format, chain FB [auth L] SDF format, chain GB [auth L] SDF format, chain HB [auth L] SDF format, chain K [auth H] SDF format, chain L [auth H] SDF format, chain M [auth H] SDF format, chain N [auth H] SDF format, chain O [auth H] SDF format, chain P [auth H] SDF format, chain Q [auth H] SDF format, chain QA [auth L] SDF format, chain R [auth H] SDF format, chain RA [auth L] SDF format, chain S [auth H] SDF format, chain SA [auth L] SDF format, chain T [auth H] SDF format, chain TA [auth L] SDF format, chain U [auth H] SDF format, chain UA [auth L] SDF format, chain V [auth H] SDF format, chain VA [auth L] SDF format, chain W [auth H] SDF format, chain WA [auth L] SDF format, chain X [auth H] SDF format, chain XA [auth L] SDF format, chain Y [auth H] SDF format, chain YA [auth L] SDF format, chain Z [auth H] SDF format, chain ZA [auth L] MOL2 format, chain AA [auth H] MOL2 format, chain AB [auth L] MOL2 format, chain BB [auth L] MOL2 format, chain CB [auth L] MOL2 format, chain DB [auth L] MOL2 format, chain EB [auth L] MOL2 format, chain FB [auth L] MOL2 format, chain GB [auth L] MOL2 format, chain HB [auth L] MOL2 format, chain K [auth H] MOL2 format, chain L [auth H] MOL2 format, chain M [auth H] MOL2 format, chain N [auth H] MOL2 format, chain O [auth H] MOL2 format, chain P [auth H] MOL2 format, chain Q [auth H] MOL2 format, chain QA [auth L] MOL2 format, chain R [auth H] MOL2 format, chain RA [auth L] MOL2 format, chain S [auth H] MOL2 format, chain SA [auth L] MOL2 format, chain T [auth H] MOL2 format, chain TA [auth L] MOL2 format, chain U [auth H] MOL2 format, chain UA [auth L] MOL2 format, chain V [auth H] MOL2 format, chain VA [auth L] MOL2 format, chain W [auth H] MOL2 format, chain WA [auth L] MOL2 format, chain X [auth H] MOL2 format, chain XA [auth L] MOL2 format, chain Y [auth H] MOL2 format, chain YA [auth L] MOL2 format, chain Z [auth H] MOL2 format, chain ZA [auth L] mmCIF format, chain AA [auth H] mmCIF format, chain AB [auth L] mmCIF format, chain BB [auth L] mmCIF format, chain CB [auth L] mmCIF format, chain DB [auth L] mmCIF format, chain EB [auth L] mmCIF format, chain FB [auth L] mmCIF format, chain GB [auth L] mmCIF format, chain HB [auth L] mmCIF format, chain K [auth H] mmCIF format, chain L [auth H] mmCIF format, chain M [auth H] mmCIF format, chain N [auth H] mmCIF format, chain O [auth H] mmCIF format, chain P [auth H] mmCIF format, chain Q [auth H] mmCIF format, chain QA [auth L] mmCIF format, chain R [auth H] mmCIF format, chain RA [auth L] mmCIF format, chain S [auth H] mmCIF format, chain SA [auth L] mmCIF format, chain T [auth H] mmCIF format, chain TA [auth L] mmCIF format, chain U [auth H] mmCIF format, chain UA [auth L] mmCIF format, chain V [auth H] mmCIF format, chain VA [auth L] mmCIF format, chain W [auth H] mmCIF format, chain WA [auth L] mmCIF format, chain X [auth H] mmCIF format, chain XA [auth L] mmCIF format, chain Y [auth H] mmCIF format, chain YA [auth L] mmCIF format, chain Z [auth H] mmCIF format, chain ZA [auth L]	AA [auth H] AB [auth L] BB [auth L] CB [auth L] DB [auth L] AA [auth H], AB [auth L], BB [auth L], CB [auth L], DB [auth L], EB [auth L], FB [auth L], GB [auth L], HB [auth L], K [auth H], L [auth H], M [auth H], N [auth H], O [auth H], P [auth H], Q [auth H], QA [auth L], R [auth H], RA [auth L], S [auth H], SA [auth L], T [auth H], TA [auth L], U [auth H], UA [auth L], V [auth H], VA [auth L], W [auth H], WA [auth L], X [auth H], XA [auth L], Y [auth H], YA [auth L], Z [auth H], ZA [auth L]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Interactions Focus chain AA [auth H] Focus chain AB [auth L] Focus chain BB [auth L] Focus chain CB [auth L] Focus chain DB [auth L] Focus chain EB [auth L] Focus chain FB [auth L] Focus chain GB [auth L] Focus chain HB [auth L] Focus chain K [auth H] Focus chain L [auth H] Focus chain M [auth H] Focus chain N [auth H] Focus chain O [auth H] Focus chain P [auth H] Focus chain Q [auth H] Focus chain QA [auth L] Focus chain R [auth H] Focus chain RA [auth L] Focus chain S [auth H] Focus chain SA [auth L] Focus chain T [auth H] Focus chain TA [auth L] Focus chain U [auth H] Focus chain UA [auth L] Focus chain V [auth H] Focus chain VA [auth L] Focus chain W [auth H] Focus chain WA [auth L] Focus chain X [auth H] Focus chain XA [auth L] Focus chain Y [auth H] Focus chain YA [auth L] Focus chain Z [auth H] Focus chain ZA [auth L] Interactions & Density Focus chain AA [auth H] Focus chain AB [auth L] Focus chain BB [auth L] Focus chain CB [auth L] Focus chain DB [auth L] Focus chain EB [auth L] Focus chain FB [auth L] Focus chain GB [auth L] Focus chain HB [auth L] Focus chain K [auth H] Focus chain L [auth H] Focus chain M [auth H] Focus chain N [auth H] Focus chain O [auth H] Focus chain P [auth H] Focus chain Q [auth H] Focus chain QA [auth L] Focus chain R [auth H] Focus chain RA [auth L] Focus chain S [auth H] Focus chain SA [auth L] Focus chain T [auth H] Focus chain TA [auth L] Focus chain U [auth H] Focus chain UA [auth L] Focus chain V [auth H] Focus chain VA [auth L] Focus chain W [auth H] Focus chain WA [auth L] Focus chain X [auth H] Focus chain XA [auth L] Focus chain Y [auth H] Focus chain YA [auth L] Focus chain Z [auth H] Focus chain ZA [auth L]