9C8E | pdb_00009c8e

mouse Seipin complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.19 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 9C8E

This is version 1.2 of the entry. See complete history

Literature

Adipogenin promotes the development of lipid droplets by binding a dodecameric seipin complex.

Li, C.Sun, X.N.Funcke, J.B.Vanharanta, L.Prasanna, X.Gov, K.Li, Y.Virostek, M.Joung, C.Joffin, N.Kanerva, K.Szkalisity, A.Kulig, W.Straub, L.Chen, S.Velasco, J.Cobb, A.La Padula, D.Wang, M.Y.Onodera, T.Voros, C.Kim, D.S.Kim, M.Varlamov, O.Li, Y.Liu, C.Nawrocki, A.R.Zhao, S.Oh, D.Y.Wang, Z.V.Gordillo, R.Goodman, J.M.Wynn, R.M.Henne, W.M.Vattulainen, I.Han, Y.Ikonen, E.Scherer, P.E.

(2025) Science 390: eadr9755-eadr9755

  • DOI: https://doi.org/10.1126/science.adr9755
  • Primary Citation Related Structures: 
    9C8D, 9C8E

  • PubMed Abstract: 

    The microprotein adipogenin (Adig) is predominantly expressed in adipose tissues. Here, we found that Adig interacts with seipin to form a stable, rigid complex. We present the structure of the seipin-Adig complex at an overall resolution of ~3.0 angstroms. The structure revealed that mammalian seipin assembles into two distinct oligomeric forms: undecamers and dodecamers. Adig selectively bound to the dodecameric form and enhanced seipin assembly by bridging and stabilizing adjacent subunits. Functionally, this complex promoted lipid droplet development at both early and late stages. In transgenic mice, adipocyte-specific overexpression of Adig increased fat mass and enlarged lipid droplets, whereas Adig deletion disrupted triglyceride accumulation in brown adipose tissues. Thus, Adig can modulate lipid storage through its structural and functional interactions with seipin.


  • Organizational Affiliation
    • Touchstone Diabetes Center, University of Texas Southwestern Medical Center, Dallas, TX, USA.

Macromolecule Content 

  • Total Structure Weight: 560.93 kDa 
  • Atom Count: 14,751 
  • Modeled Residue Count: 1,837 
  • Deposited Residue Count: 4,994 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Seipin
A, B, C, D, E
A, B, C, D, E, F, G, H, I, J, K
454Mus musculusMutation(s): 0 
Gene Names: Bscl2
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Z2E9 (Mus musculus)
Explore Q9Z2E9 
Go to UniProtKB:  Q9Z2E9
IMPC:  MGI:1298392
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9Z2E9
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.19 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX
RECONSTRUCTIONcryoSPARC

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of Diabetes and Digestive and Kidney Disease (NIH/NIDDK)United StatesRC2-DK118620
National Institutes of Health/National Institute of Diabetes and Digestive and Kidney Disease (NIH/NIDDK)United StatesR01- DK55758
National Institutes of Health/National Institute of Diabetes and Digestive and Kidney Disease (NIH/NIDDK)United StatesR01-DK099110
National Institutes of Health/National Institute of Diabetes and Digestive and Kidney Disease (NIH/NIDDK)United StatesR01-DK127274
National Institutes of Health/National Institute of Diabetes and Digestive and Kidney Disease (NIH/NIDDK)United StatesR01-DK131537

Revision History  (Full details and data files)

  • Version 1.0: 2025-08-27
    Type: Initial release
  • Version 1.1: 2025-11-05
    Changes: Data collection, Database references
  • Version 1.2: 2025-11-19
    Changes: Data collection, Database references