9C4C

The structure of two MntR dimers bound to the native mnep promoter sequence

• PDB DOI: https://doi.org/10.2210/pdb9C4C/pdb
• NAKB: 9C4C
• EM Map EMD-45181: EMDB EMDataResource

• Classification: GENE REGULATION
• Organism(s): Bacillus subtilis
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2024-06-04 Released: 2024-08-14 
• Deposition Author(s): Shi, H., Fu, Y., Glasfeld, A., Ahuja, S.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.09 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

The structure of two MntR dimers bound to the native mnep promoter sequence.

Shi, H., Fu, Y., Glasfeld, A., Ahuja, S.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: electron microscopy

Macromolecule Content

• Total Structure Weight: 91.27 kDa 
• Atom Count: 6,076 
• Modelled Residue Count: 619 
• Deposited Residue Count: 645 
• Unique protein chains: 1
• Unique nucleic acid chains: 2

Macromolecules

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
HTH-type transcriptional regulator MntR	C [auth E], D [auth F], E [auth G], F [auth H]	142	Bacillus subtilis	Mutation(s): 0  Gene Names: mntR, yqhN, BSU24520
UniProt
Find proteins for P54512 (Bacillus subtilis (strain 168)) Explore P54512  Go to UniProtKB:  P54512

Entity ID: 1
Molecule	Chains	Length	Organism	Image
DNA (39-MER)	A	39	Bacillus subtilis

Entity ID: 2
Molecule	Chains	Length	Organism	Image
DNA (38-MER)	B	38	Bacillus subtilis

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
MN	G [auth E], H [auth E], I [auth F], J [auth F], K [auth G], L [auth G], M [auth H], N [auth H]	MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.09 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-08-14 
Deposition Author(s): Shi, H., Fu, Y., Glasfeld, A., Ahuja, S.

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2024-08-14
  Type: Initial release