9C1L | pdb_00009c1l

Rhesus rotavirus (VP1 structure at 2.65 Angstrom resolution)

PDB DOI: https://doi.org/10.2210/pdb9C1L/pdb
EM Map EMD-45123: EMDB EMDataResource

Classification: VIRAL PROTEIN
Organism(s): Simian rotavirus A strain RRV
Expression System: Simian rotavirus A strain RRV
Mutation(s): No

Deposited: 2024-05-29 Released: 2025-04-30
Deposition Author(s): Jenni, S., Herrmann, T., De Sautu, M., Harrison, S.C.
Funding Organization(s): National Institutes of Health/National Cancer Institute (NIH/NCI)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.65 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 9C1L

This is version 1.0 of the entry. See complete history.

Literature

Rotavirus structure

Jenni, S., Herrmann, T., De Sautu, M., Harrison, S.C.

To be published.

Macromolecule Content

Total Structure Weight: 1,159.54 kDa
Atom Count: 74,351
Modeled Residue Count: 9,103
Deposited Residue Count: 9,958
Unique protein chains: 2

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Inner capsid protein VP2	A, B, C, D, E A, B, C, D, E, F, G, H, I, J	887	Simian rotavirus A strain RRV	Mutation(s): 0
UniProt
Find proteins for B3F2X3 (Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3])) Explore B3F2X3 Go to UniProtKB: B3F2X3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	B3F2X3
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
RNA-directed RNA polymerase	K [auth P]	1,088	Simian rotavirus A strain RRV	Mutation(s): 0 EC: 2.7.7.48
UniProt
Find proteins for B3F2X2 (Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3])) Explore B3F2X2 Go to UniProtKB: B3F2X2
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	B3F2X2
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.65 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.21rc1_5127

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2025-04-30

Deposition Author(s):

Funding Organization	Location	Grant Number
National Institutes of Health/National Cancer Institute (NIH/NCI)	United States	R01 CA13202

Revision History (Full details and data files)

Version 1.0: 2025-04-30
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.