9C1I | pdb_00009c1i

Rhesus rotavirus (VP5/VP8 structure at 3.52 Angstrom resolution)

PDB DOI: https://doi.org/10.2210/pdb9C1I/pdb
EM Map EMD-45120: EMDB EMDataResource

Classification: VIRAL PROTEIN
Organism(s): Simian rotavirus A strain RRV
Expression System: Simian rotavirus A strain RRV
Mutation(s): No

Deposited: 2024-05-29 Released: 2025-04-30
Deposition Author(s): Jenni, S., Herrmann, T., De Sautu, M., Harrison, S.C.
Funding Organization(s): National Institutes of Health/National Cancer Institute (NIH/NCI)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.52 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Rotavirus structure

Jenni, S., Herrmann, T., De Sautu, M., Harrison, S.C.

To be published.

Macromolecule Content

Total Structure Weight: 173.31 kDa
Atom Count: 6,648
Modeled Residue Count: 840
Deposited Residue Count: 1,552
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Outer capsid protein VP4	A [auth 2], B [auth 3]	776	Simian rotavirus A strain RRV	Mutation(s): 0
UniProt
Find proteins for P12473 (Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3])) Explore P12473 Go to UniProtKB: P12473
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P12473
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.52 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.21rc1_5127

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2025-04-30

Deposition Author(s):

Funding Organization	Location	Grant Number
National Institutes of Health/National Cancer Institute (NIH/NCI)	United States	R01 CA13202

Revision History (Full details and data files)

Version 1.0: 2025-04-30
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.