Download MendeleyDomain-swapping promoted by the introduction of a charge in the hydrophobic interior of a protein
Zhang, Y., Schlessman, J.L., Robinson, A.C., Garcia-Moreno E., B., Khangulov, V.S.To be published.
9C11
Crystal structure of Staphylococcal nuclease variant Delta+PHS L36R at cryogenic temperature
- PDB DOI: https://doi.org/10.2210/pdb9C11/pdb
- Classification: HYDROLASE
- Organism(s): Staphylococcus aureus
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2024-05-28 Released: 2024-06-19
- Funding Organization(s): National Science Foundation (NSF, United States), National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.95 Å
- R-Value Free: 0.261
- R-Value Work: 0.211
- R-Value Observed: 0.213
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Nuclease A | 143 | Staphylococcus aureus | Mutation(s): 4 Gene Names: nuc |  | |
UniProt | |||||
Find proteins for P00644 (Staphylococcus aureus) Explore P00644 Go to UniProtKB: P00644 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P00644 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| THP Query on THP | C [auth A], D [auth B] | THYMIDINE-3',5'-DIPHOSPHATE C10 H16 N2 O11 P2 CSNCBOPUCJOHLS-XLPZGREQSA-N |  | ||
| CA Query on CA | E [auth B] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.95 Å
- R-Value Free: 0.261
- R-Value Work: 0.211
- R-Value Observed: 0.213
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 53.183 | α = 90 |
| b = 53.201 | β = 90 |
| c = 107.422 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| CrysalisPro | data scaling |
| CrysalisPro | data reduction |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2024-06-19 Deposition Author(s): Zhang, Y., Schlessman, J.L., Siegler, M.A., Garcia-Moreno E., B.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Science Foundation (NSF, United States) | United States | MCB1517378 |
| National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | GM 061597 |
Revision History (Full details and data files)
- Version 1.0: 2024-06-19
Type: Initial release
