9BWK | pdb_00009bwk

Crystal structure of polyketoacyl-CoA thiolase from Burkholderia sp.

PDB DOI: https://doi.org/10.2210/pdb9BWK/pdb

Classification: LYASE
Organism(s): Burkholderia sp. RF2-non_BP3
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2024-05-21 Released: 2025-08-27
Deposition Author(s): Pereira, J.H., Wang, Z., Keasling, J.D., Adams, P.D.
Funding Organization(s): Department of Energy (DOE, United States)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free:
0.216 (Depositor), 0.216 (DCC)
R-Value Work:
0.174 (Depositor), 0.174 (DCC)
R-Value Observed:
0.175 (Depositor)

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

A highly active Burkholderia polyketoacyl-CoA thiolase for production of triacetic acid lactone

Wang, Z., Cheong, S., Pereira, J.H., DeGiovanni, A., Guo, Y., Hu, W., Lan, G., Kim, J., Haushalter, R., Lee, T.S., Adams, P.D., Keasling, J.D.

To be published.

Macromolecule Content

Total Structure Weight: 82.74 kDa
Atom Count: 5,856
Modeled Residue Count: 787
Deposited Residue Count: 798
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Acetyl-CoA acetyltransferase	A, B	399	Burkholderia sp. RF2-non_BP3	Mutation(s): 0 Gene Names: WS87_28010
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.216 (Depositor), 0.216 (DCC)
R-Value Work: 0.174 (Depositor), 0.174 (DCC)
R-Value Observed: 0.175 (Depositor)

Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 130.477	α = 90
b = 130.477	β = 90
c = 122.083	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
xia2	data reduction
xia2	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2025-08-27

Deposition Author(s):

Funding Organization	Location	Grant Number
Department of Energy (DOE, United States)	United States	--

Revision History (Full details and data files)

Version 1.0: 2025-08-27
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.