9BKS

Crystal structure of the Human TRIP12 WWE domain (isoform 2) in complex with ADP

• PDB DOI: https://doi.org/10.2210/pdb9BKS/pdb
• Entry: 9BKS supersedes: 7UW7

• Classification: LIGASE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2024-04-29 Released: 2024-07-31 
• Deposition Author(s): Kimani, S., Dong, A., Li, Y., Arrowsmith, C.H., Edwards, A.M., Halabelian, L., Structural Genomics Consortium (SGC)
• Funding Organization(s): Other private

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.17 Å
• R-Value Free: 0.173 
• R-Value Work: 0.150 
• R-Value Observed: 0.151 

Starting Model: experimental

Literature

Crystal structure of the Human TRIP12 WWE domain (isoform 2) in complex with ADP

Kimani, S., Dong, A., Li, Y., Arrowsmith, C.H., Edwards, A.M., Halabelian, L.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 9.52 kDa 
• Atom Count: 770 
• Modelled Residue Count: 73 
• Deposited Residue Count: 80 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Isoform 2 of E3 ubiquitin-protein ligase TRIP12	A	80	Homo sapiens	Mutation(s): 0  Gene Names: TRIP12, KIAA0045, ULF EC: 2.3.2.26
UniProt & NIH Common Fund Data Resources
Find proteins for Q14669 (Homo sapiens) Explore Q14669  Go to UniProtKB:  Q14669
PHAROS:  Q14669 GTEx:  ENSG00000153827

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ADP (Subject of Investigation/LOI)	B [auth A]	ADENOSINE-5'-DIPHOSPHATE C10 H15 N5 O10 P2 XTWYTFMLZFPYCI-KQYNXXCUSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.17 Å
• R-Value Free: 0.173 
• R-Value Work: 0.150 
• R-Value Observed: 0.151 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 30.371	α = 90
b = 33.671	β = 90
c = 66.421	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-3000	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-07-31 
Deposition Author(s): Kimani, S., Dong, A., Li, Y., Arrowsmith, C.H., Edwards, A.M., Halabelian, L., Structural Genomics Consortium (SGC)
• This entry supersedes: 7UW7

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Funding Organization	Location	Grant Number
Other private		--

Revision History  

• Version 1.0: 2024-07-31
  Type: Initial release