9BKI

Crystal structure of Rid family protein ACIAD3089 from Acinetobacter baylyi in C2 space group

• PDB DOI: https://doi.org/10.2210/pdb9BKI/pdb

• Classification: HYDROLASE
• Organism(s): Acinetobacter baylyi
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2024-04-28 Released: 2024-09-04 
• Deposition Author(s): Zhou, D., Chen, L., Rose, J.P., Wang, B.C.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.38 Å
• R-Value Free: 0.243 
• R-Value Work: 0.200 
• R-Value Observed: 0.201 

Starting Model: experimental

Literature

Crystal structure of Rid family protein ACIAD3089 from Acinetobacter baylyi in C2 space group

Zhou, D., Chen, L., Rose, J.P., Wang, B.C.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C3  (Explore in 3D)
Global Stoichiometry: Homo 3-mer - A3 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Cyclic - C3  (Explore in 3D)
Global Stoichiometry: Homo 3-mer - A3 

Biological assembly 2 assigned by authors.

Biological Assembly 3  

Global Symmetry: Cyclic - C3  (Explore in 3D)
Global Stoichiometry: Homo 3-mer - A3 

Biological assembly 3 assigned by authors.

Macromolecule Content

• Total Structure Weight: 160.1 kDa 
• Atom Count: 10,446 
• Modelled Residue Count: 1,343 
• Deposited Residue Count: 1,467 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Rid family protein ACIAD3089	A, B, C, D, E, F, G, H, I	163	Acinetobacter baylyi	Mutation(s): 0  Gene Names: ACIAD3089
UniProt
Find proteins for Q6F828 (Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)) Explore Q6F828  Go to UniProtKB:  Q6F828

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.38 Å
• R-Value Free: 0.243 
• R-Value Work: 0.200 
• R-Value Observed: 0.201 
• Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 159.27	α = 90
b = 77.38	β = 97.418
c = 150.4	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHENIX	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-09-04 
Deposition Author(s): Zhou, D., Chen, L., Rose, J.P., Wang, B.C.

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2024-09-04
  Type: Initial release