9BK1 | pdb_00009bk1

Crystal structure of Endoribonuclease L-PSP family protein PSPTO0102 Sulfur SAD phased

PDB DOI: https://doi.org/10.2210/pdb9BK1/pdb

Classification: HYDROLASE
Organism(s): Pseudomonas syringae pv. tomato
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2024-04-26 Released: 2024-09-04
Deposition Author(s): Zhou, D., Chen, L., Rose, J.P., Wang, B.C.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.57 Å
R-Value Free:
0.205 (Depositor), 0.205 (DCC)
R-Value Work:
0.177 (Depositor), 0.177 (DCC)
R-Value Observed:
0.180 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 9BK1

This is version 1.0 of the entry. See complete history.

Literature

Crystal structure of Endoribonuclease L-PSP family protein PSPTO0102 Sulfur SAD phased

Zhou, D., Chen, L., Rose, J.P., Wang, B.C.

To be published.

Macromolecule Content

Total Structure Weight: 12.9 kDa
Atom Count: 1,038
Modeled Residue Count: 116
Deposited Residue Count: 117
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
L-PSP family protein PSPTO_0102	A	117	Pseudomonas syringae pv. tomato	Mutation(s): 0 Gene Names: PSPTO_0102
UniProt
Find proteins for Q88BB5 (Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)) Explore Q88BB5 Go to UniProtKB: Q88BB5
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q88BB5
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.57 Å
R-Value Free: 0.205 (Depositor), 0.205 (DCC)
R-Value Work: 0.177 (Depositor), 0.177 (DCC)
R-Value Observed: 0.180 (Depositor)

Space Group: P 2₁ 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 66.684	α = 90
b = 66.684	β = 90
c = 66.684	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-3000	data scaling
HKL-3000	data reduction
AutoSol	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2024-09-04

Deposition Author(s):

Funding Organization	Location	Grant Number
Not funded		--

Revision History (Full details and data files)

Version 1.0: 2024-09-04
Type: Initial release

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.