9BGM

Pseudomonas phage DEV neck and tail (portal, head-to-tail and tail tube proteins)

• PDB DOI: https://doi.org/10.2210/pdb9BGM/pdb
• EM Map EMD-44517: EMDB EMDataResource

• Classification: VIRAL PROTEIN
• Organism(s): Pseudomonas phage vB_PaeP_DEV
• Mutation(s): No 


• Deposited: 2024-04-19 Released: 2024-09-04 
• Deposition Author(s): Iglesias, S.M., Hou, C.-F.D., Li, F., Cingolani, G.
• Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.10 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Integrative structural analysis of Pseudomonas phage DEV reveals a genome ejection motor

Lokareddy, R., Hou, C.-F.D., Forti, F., Iglesias, S.M., Li, F., Pavlenok, M., Niederweis, M., Briani, F., Cingolani, G.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C12  (Explore in 3D)
Global Stoichiometry: Hetero 36-mer - A12B12C12 

Biological assembly 1 assigned by authors and generated by (software)

Biological Assembly Evidence: electron microscopy

Macromolecule Content

• Total Structure Weight: 1,738.51 kDa 
• Atom Count: 102,552 
• Modelled Residue Count: 13,212 
• Deposited Residue Count: 15,492 
• Unique protein chains: 3

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
gp75 tail tube	A [auth a], BA [auth Z], D [auth A], EA [auth f], G [auth D], HA [auth i], J [auth G], M [auth J], P [auth M], S [auth P], V [auth S], Y [auth W]	321	Pseudomonas phage vB_PaeP_DEV	Mutation(s): 0
UniProt
Find proteins for A0A2K8I3N9 (Pseudomonas phage vB_PaeP_DEV) Explore A0A2K8I3N9  Go to UniProtKB:  A0A2K8I3N9

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
gp83 head-to-tail	B [auth b], CA [auth d], E [auth B], FA [auth g], H [auth E], IA [auth j], K [auth H], N [auth K], Q [auth N], T [auth Q], W [auth T], Z [auth X]	244	Pseudomonas phage vB_PaeP_DEV	Mutation(s): 0
UniProt
Find proteins for A0A2K8I0C0 (Pseudomonas phage vB_PaeP_DEV) Explore A0A2K8I0C0  Go to UniProtKB:  A0A2K8I0C0

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
gp80 portal protein	AA [auth Y], C [auth c], DA [auth e], F [auth C], GA [auth h], I [auth F], JA [auth k], L [auth I], O [auth L], R [auth O], U [auth R], X [auth V]	726	Pseudomonas phage vB_PaeP_DEV	Mutation(s): 0
UniProt
Find proteins for A0A2K8IC08 (Pseudomonas phage vB_PaeP_DEV) Explore A0A2K8IC08  Go to UniProtKB:  A0A2K8IC08

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.10 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-09-04 
Deposition Author(s): Iglesias, S.M., Hou, C.-F.D., Li, F., Cingolani, G.

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Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	GM100888
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	GM140733

Revision History  

• Version 1.0: 2024-09-04
  Type: Initial release