9BFA | pdb_00009bfa

BCAT mutant

  • Classification: TRANSFERASE
  • Organism(s): Homo sapiens
  • Expression System: Escherichia coli
  • Mutation(s): No 

  • Deposited: 2024-04-17 Released: 2025-06-11 
  • Deposition Author(s): Dong, M.
  • Funding Organization(s): National Science Foundation (NSF, United States)

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.79 Å
  • R-Value Free: 
    0.268 (Depositor), 0.282 (DCC) 
  • R-Value Work: 
    0.232 (Depositor), 0.245 (DCC) 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


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Literature

Crystal structures of the phosphorylation mimics of human cytosolic branched chain aminotransferase.

Dare, E.S.Newman, R.H.Conway, M.E.Dong, M.

(2025) Arch Biochem Biophys 770: 110479-110479

  • DOI: https://doi.org/10.1016/j.abb.2025.110479
  • Primary Citation of Related Structures:  
    9BFA, 9BFO

  • PubMed Abstract: 

    The phosphorylation sites of the human cytosolic Branched Chain Aminotransferase (hBCATc) mediated by mitogen-activated protein kinase (MAPK)/extracellular-signal-regulated-kinase 2 (ERK2, also known as MAPK1) were mapped. The crystal structures of the phosphorylation mimics at T33 and T36 were determined. The modified transaminase activity of these variants was analyzed. Although there were no major conformational changes in the phosphorylation mimics of hBCAT, a regional conformational change at the interdomain loop was observed mainly in mutant T33E. Consistently, when the catalytic turnovers of the T33E and T36E mutants were comparable to the wild type of hBCATc, the K M dropped significantly compared to the wild type, indicating a shift of the substrate binding affinity in the mutants. Taken together, this indicated the phosphorylation of hBCATc by ERK2 is affecting the hBCATc's transaminase activity.


  • Organizational Affiliation
    • Department of Chemistry and Biochemistry, University of North Carolina Wilmington, Wilmington, NC, USA.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Branched-chain-amino-acid aminotransferase, cytosolicA,
B,
C [auth E],
D [auth F]
364Homo sapiensMutation(s): 0 
Gene Names: BCAT1BCT1ECA39
EC: 2.6.1.42
UniProt & NIH Common Fund Data Resources
Find proteins for P54687 (Homo sapiens)
Explore P54687 
Go to UniProtKB:  P54687
PHAROS:  P54687
GTEx:  ENSG00000060982 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP54687
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.79 Å
  • R-Value Free:  0.268 (Depositor), 0.282 (DCC) 
  • R-Value Work:  0.232 (Depositor), 0.245 (DCC) 
Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 110.284α = 90
b = 115.63β = 90
c = 149.413γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
MOLREPphasing

Structure Validation

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Entry History & Funding Information

Deposition Data

  • Released Date: 2025-06-11 
  • Deposition Author(s): Dong, M.

Funding OrganizationLocationGrant Number
National Science Foundation (NSF, United States)United States2401097

Revision History  (Full details and data files)

  • Version 1.0: 2025-06-11
    Type: Initial release