9B3T

Octameric prenyltransferase domain of linkerless Fusicoccadiene synthase with C2 symmetry without associated cyclase domains

PDB DOI: https://doi.org/10.2210/pdb9B3T/pdb
EM Map EMD-44155: EMDB EMDataResource

Classification: TRANSFERASE
Organism(s): Diaporthe amygdali
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2024-03-20 Released: 2024-09-25
Deposition Author(s): Wenger, E.S., Schultz, K., Marmorstein, R., Christianson, D.W.
Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.53 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Exploring Substrate Channeling in an Assembly-Line Terpene Synthase

Wenger, E.S., Schultz, K., Marmorstein, R., Christianson, D.W.

To be published.

Macromolecule Content

Total Structure Weight: 616.57 kDa
Atom Count: 16,389
Modelled Residue Count: 2,049
Deposited Residue Count: 5,384
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Fusicoccadiene synthase	A, B, C, D, E A, B, C, D, E, F, G, H	673	Diaporthe amygdali	Mutation(s): 0 Gene Names: PaFS, orf1 EC: 4.2.3.43 (PDB Primary Data), 2.5.1.29 (PDB Primary Data)
UniProt
Find proteins for A2PZA5 (Phomopsis amygdali) Explore A2PZA5 Go to UniProtKB: A2PZA5
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A2PZA5
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.53 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.21_5207

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-09-25

Deposition Author(s):

Marmorstein, R.

Christianson, D.W.

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	GM56838

Revision History (Full details and data files)

Version 1.0: 2024-09-25
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.