9AR7 | pdb_00009ar7

Deposited: 2024-02-22 Released: 2025-02-26
Deposition Author(s): Zhao, Y., Shu, Y., Li, H.
Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

(2026) Nature

Macromolecule Content

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| 3D Structure

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
CRISPR-associated endonuclease Cas9	D [auth A]	1,082	Geobacillus thermodenitrificans	Mutation(s): 0 Gene Names: cas9-2, cas9, GTHT12_03401 EC: 3.1
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
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Reference Sequence

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Molecule	Chains	Length	Organism
Entity ID: 1
single guide RNA	A [auth B]	149	Geobacillus thermodenitrificans
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Reference Sequence

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Molecule	Chains	Length	Organism
Entity ID: 2
cleaved 3' target DNA strand	B [auth C]	40	Geobacillus thermodenitrificans
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Reference Sequence

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Molecule	Chains	Length	Organism
Entity ID: 3
cleaved 5' target strand	C [auth P]	14	Geobacillus thermodenitrificans
Sequence Annotations Expand
Reference Sequence

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GTP (Subject of Investigation/LOI) Query on GTP Download:Ideal Coordinates CCD File SDF format, chain E [auth B] MOL2 format, chain E [auth B] mmCIF format, chain E [auth B]	E [auth B]	GUANOSINE-5'-TRIPHOSPHATE C₁₀ H₁₆ N₅ O₁₄ P₃ XKMLYUALXHKNFT-UUOKFMHZSA-N		Interactions Focus chain E [auth B] Interactions & Density Focus chain E [auth B]
MG Query on MG Download:Ideal Coordinates CCD File SDF format, chain I [auth A] SDF format, chain H [auth A] SDF format, chain G [auth B] SDF format, chain F [auth B] MOL2 format, chain I [auth A] MOL2 format, chain H [auth A] MOL2 format, chain G [auth B] MOL2 format, chain F [auth B] mmCIF format, chain I [auth A] mmCIF format, chain H [auth A] mmCIF format, chain G [auth B] mmCIF format, chain F [auth B]	F [auth B], G [auth B], H [auth A], I [auth A]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain F [auth B] Focus chain G [auth B] Focus chain H [auth A] Focus chain I [auth A] Interactions & Density Focus chain F [auth B] Focus chain G [auth B] Focus chain H [auth A] Focus chain I [auth A]