8ZUA | pdb_00008zua

The complex structure of MPXV M1R and neutralizing antibody A138

PDB DOI: https://doi.org/10.2210/pdb8ZUA/pdb

Classification: ANTIVIRAL PROTEIN/IMMUNE SYSTEM
Organism(s): Homo sapiens, Monkeypox virus
Expression System: Homo sapiens, Spodoptera frugiperda
Mutation(s): No

Deposited: 2024-06-08 Released: 2025-04-02
Deposition Author(s): Ge, J.W.
Funding Organization(s): National Science Foundation (NSF, China)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.49 Å
R-Value Free:
0.286 (Depositor), 0.282 (DCC)
R-Value Work:
0.237 (Depositor), 0.238 (DCC)
R-Value Observed:
0.239 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.0 of the entry. See complete history.

Literature

The complex structure of MPXV M1R and neutralizing antibody A129

Ge, J.W.

To be published.

Macromolecule Content

Total Structure Weight: 265.75 kDa
Atom Count: 17,537
Modeled Residue Count: 2,334
Deposited Residue Count: 2,472
Unique protein chains: 3

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
A138 heavy chain	A, D [auth B], G [auth E], J	218	Homo sapiens	Mutation(s): 0

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Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Entry-fusion complex associated protein OPG095	B [auth F], E [auth C], H, K	187	Monkeypox virus	Mutation(s): 0 Gene Names: OPG099, MPXVgp080
UniProt
Find proteins for M1LBP0 (Monkeypox virus) Explore M1LBP0 Go to UniProtKB: M1LBP0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	M1LBP0
Sequence Annotations Expand
Reference Sequence

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Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
A138 light chain	C [auth G], F [auth D], I, L	213	Homo sapiens	Mutation(s): 0

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.49 Å
R-Value Free: 0.286 (Depositor), 0.282 (DCC)
R-Value Work: 0.237 (Depositor), 0.238 (DCC)
R-Value Observed: 0.239 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 82.39	α = 90
b = 136.678	β = 96.55
c = 123.769	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
MOLREP	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2025-04-02

Deposition Author(s):

Funding Organization	Location	Grant Number
National Science Foundation (NSF, China)	China	--

Revision History (Full details and data files)

Version 1.0: 2025-04-02
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.